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Magnesium in PDB 7xkq: F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3

Enzymatic activity of F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3

All present enzymatic activity of F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3:
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3 (pdb code 7xkq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3, PDB code: 7xkq:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 7xkq

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Magnesium binding site 1 out of 6 in the F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:96.1
occ:1.00
 O3B A:ATP600 2.0 95.2 1.0
O2B A:ATP600 2.0 95.2 1.0
O3G A:ATP600 2.0 95.2 1.0
OG1 A:THR176 2.1 85.5 1.0
PB A:ATP600 2.5 95.2 1.0
PG A:ATP600 2.6 95.2 1.0
CB A:THR176 3.0 85.5 1.0
O1A A:ATP600 3.1 95.2 1.0
O3A A:ATP600 3.2 95.2 1.0
PA A:ATP600 3.5 95.2 1.0
O2G A:ATP600 3.6 95.2 1.0
O1G A:ATP600 3.6 95.2 1.0
N A:THR176 3.8 85.5 1.0
O1B A:ATP600 3.8 95.2 1.0
O2A A:ATP600 3.9 95.2 1.0
CA A:THR176 4.0 85.5 1.0
CG2 A:THR176 4.1 85.5 1.0
C A:LYS175 4.9 86.6 1.0
N A:LYS175 5.0 86.6 1.0

Magnesium binding site 2 out of 6 in 7xkq

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Magnesium binding site 2 out of 6 in the F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:74.7
occ:1.00
 O2G B:ATP602 2.0 86.4 1.0
O2B B:ATP602 2.5 86.4 1.0
CB B:THR176 2.9 75.9 1.0
CG2 B:THR176 3.0 75.9 1.0
PG B:ATP602 3.4 86.4 1.0
O3B B:ATP602 3.5 86.4 1.0
PB B:ATP602 3.6 86.4 1.0
OG1 B:THR176 3.8 75.9 1.0
N B:THR176 3.9 75.9 1.0
CA B:THR176 4.0 75.9 1.0
OE1 B:GLN200 4.0 77.5 1.0
O3G B:ATP602 4.2 86.4 1.0
OD2 B:ASP261 4.3 74.7 1.0
OD1 B:ASP261 4.4 74.7 1.0
O1G B:ATP602 4.4 86.4 1.0
O2A B:ATP602 4.6 86.4 1.0
O3A B:ATP602 4.6 86.4 1.0
O1B B:ATP602 4.6 86.4 1.0
CG B:ASP261 4.8 74.7 1.0
CD B:GLN200 4.9 77.5 1.0

Magnesium binding site 3 out of 6 in 7xkq

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Magnesium binding site 3 out of 6 in the F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:82.7
occ:1.00
 O3B C:ATP600 2.0 83.3 1.0
O3G C:ATP600 2.0 83.3 1.0
O2B C:ATP600 2.0 83.3 1.0
OG1 C:THR176 2.0 74.9 1.0
PB C:ATP600 2.5 83.3 1.0
PG C:ATP600 2.5 83.3 1.0
CB C:THR176 2.8 74.9 1.0
O3A C:ATP600 3.4 83.3 1.0
N C:THR176 3.5 74.9 1.0
O1G C:ATP600 3.5 83.3 1.0
O2G C:ATP600 3.6 83.3 1.0
O1B C:ATP600 3.7 83.3 1.0
O1A C:ATP600 3.7 83.3 1.0
O2A C:ATP600 3.7 83.3 1.0
PA C:ATP600 3.8 83.3 1.0
CA C:THR176 3.8 74.9 1.0
CG2 C:THR176 4.0 74.9 1.0
C C:LYS175 4.7 75.2 1.0
N C:LYS175 4.8 75.2 1.0
CB C:LYS175 4.9 75.2 1.0
C C:THR176 5.0 74.9 1.0

Magnesium binding site 4 out of 6 in 7xkq

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Magnesium binding site 4 out of 6 in the F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:92.8
occ:1.00
 OG1 D:THR165 2.0 91.0 1.0
O2B D:ADP602 2.1 96.6 1.0
OE2 D:GLU190 2.5 93.2 1.0
CB D:THR165 3.3 91.0 1.0
OE2 D:GLU194 3.3 93.1 1.0
PB D:ADP602 3.5 96.6 1.0
NH1 D:ARG191 3.6 90.1 1.0
CD D:GLU190 3.7 93.2 1.0
OE1 D:GLU194 3.9 93.1 1.0
CD D:GLU194 4.0 93.1 1.0
CG2 D:THR165 4.0 91.0 1.0
O2A D:ADP602 4.1 96.6 1.0
O1B D:ADP602 4.1 96.6 1.0
O3B D:ADP602 4.2 96.6 1.0
N D:THR165 4.4 91.0 1.0
CA D:THR165 4.4 91.0 1.0
CG D:GLU190 4.4 93.2 1.0
O3A D:ADP602 4.5 96.6 1.0
OE1 D:GLU190 4.5 93.2 1.0
PA D:ADP602 4.7 96.6 1.0
CZ D:ARG191 4.8 90.1 1.0
ND2 D:ASN253 4.8 88.0 1.0
OD1 D:ASP252 4.9 87.7 1.0
OD2 D:ASP252 4.9 87.7 1.0
O1A D:ADP602 4.9 96.6 1.0

Magnesium binding site 5 out of 6 in 7xkq

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Magnesium binding site 5 out of 6 in the F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg502

b:104.4
occ:1.00
 O3B E:ATP501 2.0 106.2 1.0
O3A E:ATP501 2.0 106.2 1.0
O1G E:ATP501 2.1 106.2 1.0
PG E:ATP501 2.5 106.2 1.0
PB E:ATP501 2.6 106.2 1.0
CG2 E:THR165 2.7 92.0 1.0
PA E:ATP501 3.3 106.2 1.0
OG1 E:THR165 3.3 92.0 1.0
O2B E:ATP501 3.4 106.2 1.0
O3G E:ATP501 3.5 106.2 1.0
CB E:THR165 3.6 92.0 1.0
O2G E:ATP501 3.6 106.2 1.0
O1A E:ATP501 3.7 106.2 1.0
O1B E:ATP501 3.8 106.2 1.0
N E:THR165 3.8 92.0 1.0
O2A E:ATP501 3.9 106.2 1.0
CA E:THR165 4.3 92.0 1.0
O5' E:ATP501 4.5 106.2 1.0
CB E:LYS164 4.6 93.3 1.0
N E:LYS164 4.6 93.3 1.0
C E:LYS164 4.8 93.3 1.0
CA E:LYS164 5.0 93.3 1.0

Magnesium binding site 6 out of 6 in 7xkq

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Magnesium binding site 6 out of 6 in the F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg502

b:72.2
occ:1.00
 OG1 F:THR165 2.0 74.4 1.0
O3G F:ATP501 2.0 80.0 1.0
OE2 F:GLU190 2.3 79.7 1.0
O1B F:ATP501 3.0 80.0 1.0
CB F:THR165 3.3 74.4 1.0
PG F:ATP501 3.5 80.0 1.0
OE2 F:GLU194 3.5 79.8 1.0
CD F:GLU190 3.5 79.7 1.0
O1A F:ATP501 3.8 80.0 1.0
NH2 F:ARG191 3.8 73.5 1.0
O3B F:ATP501 3.9 80.0 1.0
PB F:ATP501 4.0 80.0 1.0
CG2 F:THR165 4.0 74.4 1.0
OE1 F:GLU190 4.2 79.7 1.0
OE1 F:GLU194 4.3 79.8 1.0
CD F:GLU194 4.3 79.8 1.0
O2G F:ATP501 4.3 80.0 1.0
N F:THR165 4.3 74.4 1.0
CA F:THR165 4.3 74.4 1.0
O1G F:ATP501 4.3 80.0 1.0
O3A F:ATP501 4.5 80.0 1.0
CG F:GLU190 4.6 79.7 1.0
PA F:ATP501 4.6 80.0 1.0
OD1 F:ASP252 5.0 73.3 1.0
CZ F:ARG191 5.0 73.5 1.0

Reference:

A.Nakano, K.Yokoyama, J.Kishikawa, A.Nakanishi, K.Mitsuoka. Structural Basis of Unisite Catalysis of Thermophilic FOF1-Atpase To Be Published.
Page generated: Thu Oct 3 12:28:38 2024

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