Atomistry » Magnesium » PDB 7xam-7xqx » 7xkq
Atomistry »
  Magnesium »
    PDB 7xam-7xqx »
      7xkq »

Magnesium in PDB 7xkq: F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3

Enzymatic activity of F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3

All present enzymatic activity of F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3:
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3 (pdb code 7xkq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3, PDB code: 7xkq:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 7xkq

Go back to Magnesium Binding Sites List in 7xkq
Magnesium binding site 1 out of 6 in the F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:96.1
occ:1.00
O3B A:ATP600 2.0 95.2 1.0
O2B A:ATP600 2.0 95.2 1.0
O3G A:ATP600 2.0 95.2 1.0
OG1 A:THR176 2.1 85.5 1.0
PB A:ATP600 2.5 95.2 1.0
PG A:ATP600 2.6 95.2 1.0
CB A:THR176 3.0 85.5 1.0
O1A A:ATP600 3.1 95.2 1.0
O3A A:ATP600 3.2 95.2 1.0
PA A:ATP600 3.5 95.2 1.0
O2G A:ATP600 3.6 95.2 1.0
O1G A:ATP600 3.6 95.2 1.0
N A:THR176 3.8 85.5 1.0
O1B A:ATP600 3.8 95.2 1.0
O2A A:ATP600 3.9 95.2 1.0
CA A:THR176 4.0 85.5 1.0
CG2 A:THR176 4.1 85.5 1.0
C A:LYS175 4.9 86.6 1.0
N A:LYS175 5.0 86.6 1.0

Magnesium binding site 2 out of 6 in 7xkq

Go back to Magnesium Binding Sites List in 7xkq
Magnesium binding site 2 out of 6 in the F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:74.7
occ:1.00
O2G B:ATP602 2.0 86.4 1.0
O2B B:ATP602 2.5 86.4 1.0
CB B:THR176 2.9 75.9 1.0
CG2 B:THR176 3.0 75.9 1.0
PG B:ATP602 3.4 86.4 1.0
O3B B:ATP602 3.5 86.4 1.0
PB B:ATP602 3.6 86.4 1.0
OG1 B:THR176 3.8 75.9 1.0
N B:THR176 3.9 75.9 1.0
CA B:THR176 4.0 75.9 1.0
OE1 B:GLN200 4.0 77.5 1.0
O3G B:ATP602 4.2 86.4 1.0
OD2 B:ASP261 4.3 74.7 1.0
OD1 B:ASP261 4.4 74.7 1.0
O1G B:ATP602 4.4 86.4 1.0
O2A B:ATP602 4.6 86.4 1.0
O3A B:ATP602 4.6 86.4 1.0
O1B B:ATP602 4.6 86.4 1.0
CG B:ASP261 4.8 74.7 1.0
CD B:GLN200 4.9 77.5 1.0

Magnesium binding site 3 out of 6 in 7xkq

Go back to Magnesium Binding Sites List in 7xkq
Magnesium binding site 3 out of 6 in the F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:82.7
occ:1.00
O3B C:ATP600 2.0 83.3 1.0
O3G C:ATP600 2.0 83.3 1.0
O2B C:ATP600 2.0 83.3 1.0
OG1 C:THR176 2.0 74.9 1.0
PB C:ATP600 2.5 83.3 1.0
PG C:ATP600 2.5 83.3 1.0
CB C:THR176 2.8 74.9 1.0
O3A C:ATP600 3.4 83.3 1.0
N C:THR176 3.5 74.9 1.0
O1G C:ATP600 3.5 83.3 1.0
O2G C:ATP600 3.6 83.3 1.0
O1B C:ATP600 3.7 83.3 1.0
O1A C:ATP600 3.7 83.3 1.0
O2A C:ATP600 3.7 83.3 1.0
PA C:ATP600 3.8 83.3 1.0
CA C:THR176 3.8 74.9 1.0
CG2 C:THR176 4.0 74.9 1.0
C C:LYS175 4.7 75.2 1.0
N C:LYS175 4.8 75.2 1.0
CB C:LYS175 4.9 75.2 1.0
C C:THR176 5.0 74.9 1.0

Magnesium binding site 4 out of 6 in 7xkq

Go back to Magnesium Binding Sites List in 7xkq
Magnesium binding site 4 out of 6 in the F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:92.8
occ:1.00
OG1 D:THR165 2.0 91.0 1.0
O2B D:ADP602 2.1 96.6 1.0
OE2 D:GLU190 2.5 93.2 1.0
CB D:THR165 3.3 91.0 1.0
OE2 D:GLU194 3.3 93.1 1.0
PB D:ADP602 3.5 96.6 1.0
NH1 D:ARG191 3.6 90.1 1.0
CD D:GLU190 3.7 93.2 1.0
OE1 D:GLU194 3.9 93.1 1.0
CD D:GLU194 4.0 93.1 1.0
CG2 D:THR165 4.0 91.0 1.0
O2A D:ADP602 4.1 96.6 1.0
O1B D:ADP602 4.1 96.6 1.0
O3B D:ADP602 4.2 96.6 1.0
N D:THR165 4.4 91.0 1.0
CA D:THR165 4.4 91.0 1.0
CG D:GLU190 4.4 93.2 1.0
O3A D:ADP602 4.5 96.6 1.0
OE1 D:GLU190 4.5 93.2 1.0
PA D:ADP602 4.7 96.6 1.0
CZ D:ARG191 4.8 90.1 1.0
ND2 D:ASN253 4.8 88.0 1.0
OD1 D:ASP252 4.9 87.7 1.0
OD2 D:ASP252 4.9 87.7 1.0
O1A D:ADP602 4.9 96.6 1.0

Magnesium binding site 5 out of 6 in 7xkq

Go back to Magnesium Binding Sites List in 7xkq
Magnesium binding site 5 out of 6 in the F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg502

b:104.4
occ:1.00
O3B E:ATP501 2.0 106.2 1.0
O3A E:ATP501 2.0 106.2 1.0
O1G E:ATP501 2.1 106.2 1.0
PG E:ATP501 2.5 106.2 1.0
PB E:ATP501 2.6 106.2 1.0
CG2 E:THR165 2.7 92.0 1.0
PA E:ATP501 3.3 106.2 1.0
OG1 E:THR165 3.3 92.0 1.0
O2B E:ATP501 3.4 106.2 1.0
O3G E:ATP501 3.5 106.2 1.0
CB E:THR165 3.6 92.0 1.0
O2G E:ATP501 3.6 106.2 1.0
O1A E:ATP501 3.7 106.2 1.0
O1B E:ATP501 3.8 106.2 1.0
N E:THR165 3.8 92.0 1.0
O2A E:ATP501 3.9 106.2 1.0
CA E:THR165 4.3 92.0 1.0
O5' E:ATP501 4.5 106.2 1.0
CB E:LYS164 4.6 93.3 1.0
N E:LYS164 4.6 93.3 1.0
C E:LYS164 4.8 93.3 1.0
CA E:LYS164 5.0 93.3 1.0

Magnesium binding site 6 out of 6 in 7xkq

Go back to Magnesium Binding Sites List in 7xkq
Magnesium binding site 6 out of 6 in the F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of F1 Domain of FOF1-Atpase with the Down Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg502

b:72.2
occ:1.00
OG1 F:THR165 2.0 74.4 1.0
O3G F:ATP501 2.0 80.0 1.0
OE2 F:GLU190 2.3 79.7 1.0
O1B F:ATP501 3.0 80.0 1.0
CB F:THR165 3.3 74.4 1.0
PG F:ATP501 3.5 80.0 1.0
OE2 F:GLU194 3.5 79.8 1.0
CD F:GLU190 3.5 79.7 1.0
O1A F:ATP501 3.8 80.0 1.0
NH2 F:ARG191 3.8 73.5 1.0
O3B F:ATP501 3.9 80.0 1.0
PB F:ATP501 4.0 80.0 1.0
CG2 F:THR165 4.0 74.4 1.0
OE1 F:GLU190 4.2 79.7 1.0
OE1 F:GLU194 4.3 79.8 1.0
CD F:GLU194 4.3 79.8 1.0
O2G F:ATP501 4.3 80.0 1.0
N F:THR165 4.3 74.4 1.0
CA F:THR165 4.3 74.4 1.0
O1G F:ATP501 4.3 80.0 1.0
O3A F:ATP501 4.5 80.0 1.0
CG F:GLU190 4.6 79.7 1.0
PA F:ATP501 4.6 80.0 1.0
OD1 F:ASP252 5.0 73.3 1.0
CZ F:ARG191 5.0 73.5 1.0

Reference:

A.Nakano, K.Yokoyama, J.Kishikawa, A.Nakanishi, K.Mitsuoka. Structural Basis of Unisite Catalysis of Thermophilic FOF1-Atpase To Be Published.
Page generated: Thu Oct 3 12:28:38 2024

Last articles

Mg in 8ARQ
Mg in 8ARR
Mg in 8AQ7
Mg in 8ARO
Mg in 8ARG
Mg in 8AQZ
Mg in 8AR5
Mg in 8AR4
Mg in 8AQE
Mg in 8AQ5
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy