Magnesium in PDB 7xkr: F1 Domain of FOF1-Atpase with the Up Form of Epsilon Subunit From Bacillus PS3

All present enzymatic activity of F1 Domain of FOF1-Atpase with the Up Form of Epsilon Subunit From Bacillus PS3:
7.1.2.2;

The binding sites of Magnesium atom in the F1 Domain of FOF1-Atpase with the Up Form of Epsilon Subunit From Bacillus PS3 (pdb code 7xkr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the F1 Domain of FOF1-Atpase with the Up Form of Epsilon Subunit From Bacillus PS3, PDB code: 7xkr:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the F1 Domain of FOF1-Atpase with the Up Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of F1 Domain of FOF1-Atpase with the Up Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:101.8 occ:1.00 O2G A:ATP600 2.0 107.9 1.0 OG1 A:THR176 2.0 96.6 1.0 O1B A:ATP600 2.5 107.9 1.0 CB A:THR176 3.3 96.6 1.0 PG A:ATP600 3.4 107.9 1.0 PB A:ATP600 3.6 107.9 1.0 O3B A:ATP600 3.7 107.9 1.0 CG2 A:THR176 3.9 96.6 1.0 OE1 A:GLN200 4.1 94.3 1.0 OD2 A:ASP261 4.2 95.7 1.0 O1G A:ATP600 4.2 107.9 1.0 OD1 A:ASP261 4.3 95.7 1.0 CA A:THR176 4.4 96.6 1.0 N A:THR176 4.4 96.6 1.0 O3G A:ATP600 4.4 107.9 1.0 O1A A:ATP600 4.5 107.9 1.0 O3A A:ATP600 4.5 107.9 1.0 CG A:ASP261 4.6 95.7 1.0 O2B A:ATP600 4.8 107.9 1.0 PA A:ATP600 4.9 107.9 1.0

Magnesium binding site 2 out of 5 in the F1 Domain of FOF1-Atpase with the Up Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of F1 Domain of FOF1-Atpase with the Up Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:94.6 occ:1.00 OG1 B:THR176 2.1 88.7 1.0 O2G B:ATP600 2.1 98.6 1.0 O2B B:ATP600 2.1 98.6 1.0 PG B:ATP600 3.3 98.6 1.0 PB B:ATP600 3.3 98.6 1.0 O3B B:ATP600 3.3 98.6 1.0 CB B:THR176 3.4 88.7 1.0 OD2 B:ASP261 4.1 89.7 1.0 O1G B:ATP600 4.1 98.6 1.0 CG2 B:THR176 4.2 88.7 1.0 O1B B:ATP600 4.2 98.6 1.0 OE1 B:GLN200 4.2 90.2 1.0 N B:THR176 4.3 88.7 1.0 O3A B:ATP600 4.4 98.6 1.0 O3G B:ATP600 4.4 98.6 1.0 CA B:THR176 4.4 88.7 1.0 O2A B:ATP600 4.4 98.6 1.0 OD1 B:ASP261 4.8 89.7 1.0 PA B:ATP600 4.8 98.6 1.0 CG B:ASP261 4.9 89.7 1.0

Magnesium binding site 3 out of 5 in the F1 Domain of FOF1-Atpase with the Up Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of F1 Domain of FOF1-Atpase with the Up Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:88.7 occ:1.00 OG1 C:THR176 2.1 86.6 1.0 O3G C:ATP602 2.1 92.9 1.0 O2B C:ATP602 2.3 92.9 1.0 PG C:ATP602 3.3 92.9 1.0 O3B C:ATP602 3.4 92.9 1.0 PB C:ATP602 3.4 92.9 1.0 CB C:THR176 3.4 86.6 1.0 O2G C:ATP602 3.9 92.9 1.0 CG2 C:THR176 4.2 86.6 1.0 OD2 C:ASP261 4.2 92.2 1.0 N C:THR176 4.3 86.6 1.0 O1B C:ATP602 4.4 92.9 1.0 CA C:THR176 4.4 86.6 1.0 O3A C:ATP602 4.4 92.9 1.0 O1G C:ATP602 4.5 92.9 1.0 O2A C:ATP602 4.6 92.9 1.0 OD1 C:ASP261 4.7 92.2 1.0 O1A C:ATP602 4.8 92.9 1.0 PA C:ATP602 4.8 92.9 1.0 CG C:ASP261 4.9 92.2 1.0 NE2 C:GLN200 5.0 90.4 1.0

Magnesium binding site 4 out of 5 in the F1 Domain of FOF1-Atpase with the Up Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of F1 Domain of FOF1-Atpase with the Up Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg501 b:113.9 occ:1.00 O2B E:ATP502 2.1 115.2 1.0 O3G E:ATP502 2.1 115.2 1.0 OG1 E:THR165 2.4 100.6 1.0 O3B E:ATP502 2.7 115.2 1.0 PB E:ATP502 2.9 115.2 1.0 O1A E:ATP502 2.9 115.2 1.0 PG E:ATP502 3.0 115.2 1.0 CB E:THR165 3.4 100.6 1.0 O3A E:ATP502 3.4 115.2 1.0 PA E:ATP502 3.5 115.2 1.0 O2G E:ATP502 4.0 115.2 1.0 O2A E:ATP502 4.0 115.2 1.0 O1G E:ATP502 4.0 115.2 1.0 O1B E:ATP502 4.2 115.2 1.0 N E:THR165 4.3 100.6 1.0 CG2 E:THR165 4.3 100.6 1.0 CA E:THR165 4.5 100.6 1.0 OE1 E:GLU201 4.8 104.6 1.0

Magnesium binding site 5 out of 5 in the F1 Domain of FOF1-Atpase with the Up Form of Epsilon Subunit From Bacillus PS3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of F1 Domain of FOF1-Atpase with the Up Form of Epsilon Subunit From Bacillus PS3 within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:89.6 occ:1.00 OG1 F:THR165 2.1 86.2 1.0 O3B F:ADP602 2.1 91.2 1.0 O2B F:ADP602 2.9 91.2 1.0 PB F:ADP602 3.0 91.2 1.0 CB F:THR165 3.4 86.2 1.0 O2A F:ADP602 3.6 91.2 1.0 OE1 F:GLU190 3.6 95.0 1.0 NH1 F:ARG191 3.7 90.0 1.0 OE2 F:GLU194 4.0 97.7 1.0 O1B F:ADP602 4.1 91.2 1.0 O3A F:ADP602 4.1 91.2 1.0 N F:THR165 4.2 86.2 1.0 PA F:ADP602 4.3 91.2 1.0 CG2 F:THR165 4.3 86.2 1.0 OE1 F:GLU194 4.3 97.7 1.0 CA F:THR165 4.3 86.2 1.0 CD F:GLU190 4.4 95.0 1.0 CD F:GLU194 4.6 97.7 1.0 O1A F:ADP602 4.7 91.2 1.0 OE2 F:GLU190 4.9 95.0 1.0 CZ F:ARG191 4.9 90.0 1.0

A.Nakano, K.Yokoyama, J.Kishikawa, A.Nakanishi, K.Mitsuoka. Structural Basis of Unisite Catalysis of Thermophilic FOF1-Atpase To Be Published.