Atomistry » Magnesium » PDB 8c8i-8cgv » 8c8j
Atomistry »
  Magnesium »
    PDB 8c8i-8cgv »
      8c8j »

Magnesium in PDB 8c8j: Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp

Enzymatic activity of Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp

All present enzymatic activity of Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp:
2.7.7.49;

Protein crystallography data

The structure of Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp, PDB code: 8c8j was solved by C.E.Nichols, T.B.Walpole, E.Baldwin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.66 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 119.349, 84.528, 107.938, 90, 91.48, 90
R / Rfree (%) 20.8 / 23.8

Other elements in 8c8j:

The structure of Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp (pdb code 8c8j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp, PDB code: 8c8j:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8c8j

Go back to Magnesium Binding Sites List in 8c8j
Magnesium binding site 1 out of 2 in the Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1120

b:54.8
occ:1.00
 O5 A:CIT1101 2.2 76.8 1.0
O A:LYS556 2.4 54.0 1.0
O A:HOH1375 2.4 63.7 1.0
O A:ILE559 2.4 46.8 1.0
O1 A:CIT1101 2.5 79.8 1.0
C4 A:CIT1101 3.0 78.8 1.0
C6 A:CIT1101 3.2 77.4 1.0
C A:LYS556 3.4 53.8 1.0
C A:ILE559 3.5 45.8 1.0
C1 A:CIT1101 3.6 79.6 1.0
C3 A:CIT1101 3.6 78.5 1.0
C5 A:CIT1101 3.8 79.2 1.0
CG A:LYS556 3.8 64.2 1.0
CA A:LYS556 3.9 54.2 1.0
O3 A:CIT1101 3.9 79.2 1.0
N A:HIS561 3.9 43.3 1.0
CA A:HIS560 4.0 43.8 1.0
C2 A:CIT1101 4.0 78.9 1.0
C A:HIS560 4.1 44.2 1.0
N A:HIS560 4.1 44.1 1.0
O A:HOH1289 4.3 42.1 1.0
O6 A:CIT1101 4.3 77.3 1.0
CB A:LYS556 4.4 57.6 1.0
NZ A:LYS556 4.5 76.4 1.0
N A:LYS557 4.6 53.2 1.0
CA A:HIS561 4.6 43.7 1.0
CA A:ILE559 4.6 46.9 1.0
O2 A:CIT1101 4.7 79.9 1.0
N A:ILE559 4.7 48.0 1.0
O4 A:CIT1101 4.7 79.1 1.0
CB A:HIS561 4.8 43.7 1.0
O A:ILE555 4.9 53.1 1.0
O7 A:CIT1101 4.9 78.6 1.0
O A:HIS560 5.0 45.0 1.0

Magnesium binding site 2 out of 2 in 8c8j

Go back to Magnesium Binding Sites List in 8c8j
Magnesium binding site 2 out of 2 in the Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1121

b:38.0
occ:1.00
 O A:ALA601 2.2 44.0 1.0
O1B A:TTP1102 2.3 43.4 1.0
OD2 A:ASP702 2.3 47.9 1.0
O2G A:TTP1102 2.3 43.2 1.0
O1A A:TTP1102 2.3 42.1 1.0
OD1 A:ASP600 2.4 54.6 1.0
CG A:ASP600 3.0 55.8 1.0
OD2 A:ASP600 3.1 60.4 1.0
PB A:TTP1102 3.3 44.0 1.0
O A:HOH1203 3.3 40.6 1.0
C A:ALA601 3.4 43.7 1.0
CG A:ASP702 3.4 46.7 1.0
PA A:TTP1102 3.4 43.1 1.0
O3A A:TTP1102 3.5 43.5 1.0
PG A:TTP1102 3.5 43.9 1.0
O3B A:TTP1102 3.7 43.7 1.0
N A:ALA601 3.8 44.6 1.0
OD1 A:ASP702 4.0 46.8 1.0
NZ A:LYS737 4.0 64.2 1.0
CA A:ALA601 4.1 44.0 1.0
C5' A:TTP1102 4.1 41.0 1.0
O3G A:TTP1102 4.2 43.9 1.0
O5' A:TTP1102 4.3 42.1 1.0
CB A:ALA604 4.4 41.3 1.0
CB A:ASP600 4.4 49.8 1.0
N A:GLU602 4.4 42.3 1.0
C A:ASP600 4.4 46.0 1.0
N A:LYS603 4.5 41.5 1.0
N A:ALA604 4.5 42.1 1.0
CB A:ASP702 4.5 45.2 1.0
CB A:ALA601 4.6 44.3 1.0
O2A A:TTP1102 4.7 43.2 1.0
CA A:GLU602 4.7 43.0 1.0
O2B A:TTP1102 4.7 44.5 1.0
O A:HOH1371 4.7 55.0 1.0
O1G A:TTP1102 4.7 43.5 1.0
C A:GLU602 4.8 42.3 1.0
CA A:ASP600 4.8 47.3 1.0

Reference:

C.E.Nichols, T.B.Walpole, E.Baldwin. Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp To Be Published.
Page generated: Fri Aug 15 00:17:48 2025

Last articles

Mg in 8DBA
Mg in 8DBE
Mg in 8D9S
Mg in 8D9R
Mg in 8D9D
Mg in 8D96
Mg in 8CVM
Mg in 8D8K
Mg in 8D8J
Mg in 8D5L
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy