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Magnesium in PDB 8ccj: Crystal Structure of Mycobacterium Smegmatis Thioredoxin Reductase in Complex with Nadph

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Smegmatis Thioredoxin Reductase in Complex with Nadph, PDB code: 8ccj was solved by F.T.Fuesser, O.Koch, D.Kuemmel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.10 / 1.80
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 67.92, 67.92, 154.99, 90, 90, 120
R / Rfree (%) 18 / 20.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Mycobacterium Smegmatis Thioredoxin Reductase in Complex with Nadph (pdb code 8ccj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Mycobacterium Smegmatis Thioredoxin Reductase in Complex with Nadph, PDB code: 8ccj:

Magnesium binding site 1 out of 1 in 8ccj

Go back to Magnesium Binding Sites List in 8ccj
Magnesium binding site 1 out of 1 in the Crystal Structure of Mycobacterium Smegmatis Thioredoxin Reductase in Complex with Nadph


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mycobacterium Smegmatis Thioredoxin Reductase in Complex with Nadph within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg409

b:36.5
occ:1.00
O A:GLY43 3.2 28.5 1.0
C A:GLY43 3.3 32.1 1.0
O A:HOH576 3.4 27.0 1.0
CA A:GLY43 3.8 26.4 1.0
O3B A:FAD401 3.8 23.5 1.0
N A:ALA44 3.8 24.0 1.0
O A:GLN40 3.9 30.8 1.0
C3B A:FAD401 4.0 23.0 1.0
CA A:ALA44 4.1 25.3 1.0
N A:GLY43 4.2 26.7 1.0
NH2 A:ARG245 4.3 32.4 1.0
O2B A:FAD401 4.4 24.4 1.0
CG2 A:THR47 4.7 50.7 1.0
C2B A:FAD401 4.8 23.0 1.0

Reference:

F.T.Fuesser, P.Otten, D.Kuemmel, A.Junker, O.Koch. Fragment-Based Design of Mycobacterial Thioredoxin Reductase Inhibitors Based on Computational Exploration of A Huge Virtual Space To Be Published.
Page generated: Thu Oct 3 20:34:27 2024

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