Magnesium in PDB 8cco: Jas-Stabilized F-Actinii From Plasmodium Falciparum
Other elements in 8cco:
The structure of Jas-Stabilized F-Actinii From Plasmodium Falciparum also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Jas-Stabilized F-Actinii From Plasmodium Falciparum
(pdb code 8cco). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the
Jas-Stabilized F-Actinii From Plasmodium Falciparum, PDB code: 8cco:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
Magnesium binding site 1 out
of 6 in 8cco
Go back to
Magnesium Binding Sites List in 8cco
Magnesium binding site 1 out
of 6 in the Jas-Stabilized F-Actinii From Plasmodium Falciparum
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Jas-Stabilized F-Actinii From Plasmodium Falciparum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg403
b:22.8
occ:1.00
|
O2B
|
A:ADP402
|
2.0
|
25.5
|
1.0
|
PB
|
A:ADP402
|
3.5
|
25.5
|
1.0
|
OE1
|
A:GLN137
|
3.8
|
33.2
|
1.0
|
OD1
|
A:ASP154
|
4.0
|
29.1
|
1.0
|
O3B
|
A:ADP402
|
4.0
|
25.5
|
1.0
|
O2A
|
A:ADP402
|
4.1
|
25.5
|
1.0
|
O3A
|
A:ADP402
|
4.3
|
25.5
|
1.0
|
CD
|
A:GLN137
|
4.4
|
33.2
|
1.0
|
O1B
|
A:ADP402
|
4.5
|
25.5
|
1.0
|
OD2
|
A:ASP154
|
4.6
|
29.1
|
1.0
|
NE2
|
A:GLN137
|
4.6
|
33.2
|
1.0
|
CA
|
A:GLY156
|
4.6
|
27.8
|
1.0
|
OD2
|
A:ASP11
|
4.6
|
30.5
|
1.0
|
CG
|
A:ASP154
|
4.7
|
29.1
|
1.0
|
PA
|
A:ADP402
|
4.9
|
25.5
|
1.0
|
|
Magnesium binding site 2 out
of 6 in 8cco
Go back to
Magnesium Binding Sites List in 8cco
Magnesium binding site 2 out
of 6 in the Jas-Stabilized F-Actinii From Plasmodium Falciparum
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Jas-Stabilized F-Actinii From Plasmodium Falciparum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg403
b:19.9
occ:1.00
|
O2B
|
B:ADP402
|
2.0
|
25.6
|
1.0
|
PB
|
B:ADP402
|
3.5
|
25.6
|
1.0
|
OE1
|
B:GLN137
|
3.8
|
30.4
|
1.0
|
OD1
|
B:ASP154
|
4.0
|
26.6
|
1.0
|
O3B
|
B:ADP402
|
4.0
|
25.6
|
1.0
|
O2A
|
B:ADP402
|
4.1
|
25.6
|
1.0
|
O3A
|
B:ADP402
|
4.3
|
25.6
|
1.0
|
CD
|
B:GLN137
|
4.4
|
30.4
|
1.0
|
O1B
|
B:ADP402
|
4.5
|
25.6
|
1.0
|
OD2
|
B:ASP154
|
4.6
|
26.6
|
1.0
|
NE2
|
B:GLN137
|
4.6
|
30.4
|
1.0
|
CA
|
B:GLY156
|
4.6
|
26.5
|
1.0
|
OD2
|
B:ASP11
|
4.6
|
29.2
|
1.0
|
CG
|
B:ASP154
|
4.7
|
26.6
|
1.0
|
PA
|
B:ADP402
|
4.9
|
25.6
|
1.0
|
|
Magnesium binding site 3 out
of 6 in 8cco
Go back to
Magnesium Binding Sites List in 8cco
Magnesium binding site 3 out
of 6 in the Jas-Stabilized F-Actinii From Plasmodium Falciparum
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Jas-Stabilized F-Actinii From Plasmodium Falciparum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg403
b:21.9
occ:1.00
|
O2B
|
C:ADP402
|
2.0
|
22.5
|
1.0
|
PB
|
C:ADP402
|
3.5
|
22.5
|
1.0
|
OE1
|
C:GLN137
|
3.8
|
31.1
|
1.0
|
OD1
|
C:ASP154
|
4.0
|
25.4
|
1.0
|
O3B
|
C:ADP402
|
4.0
|
22.5
|
1.0
|
O2A
|
C:ADP402
|
4.1
|
22.5
|
1.0
|
O3A
|
C:ADP402
|
4.3
|
22.5
|
1.0
|
CD
|
C:GLN137
|
4.4
|
31.1
|
1.0
|
O1B
|
C:ADP402
|
4.5
|
22.5
|
1.0
|
OD2
|
C:ASP154
|
4.6
|
25.4
|
1.0
|
NE2
|
C:GLN137
|
4.6
|
31.1
|
1.0
|
CA
|
C:GLY156
|
4.6
|
25.2
|
1.0
|
OD2
|
C:ASP11
|
4.6
|
27.5
|
1.0
|
CG
|
C:ASP154
|
4.7
|
25.4
|
1.0
|
PA
|
C:ADP402
|
4.9
|
22.5
|
1.0
|
|
Magnesium binding site 4 out
of 6 in 8cco
Go back to
Magnesium Binding Sites List in 8cco
Magnesium binding site 4 out
of 6 in the Jas-Stabilized F-Actinii From Plasmodium Falciparum
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Jas-Stabilized F-Actinii From Plasmodium Falciparum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg403
b:25.4
occ:1.00
|
O2B
|
D:ADP402
|
2.0
|
24.7
|
1.0
|
PB
|
D:ADP402
|
3.5
|
24.7
|
1.0
|
OE1
|
D:GLN137
|
3.8
|
33.8
|
1.0
|
OD1
|
D:ASP154
|
4.0
|
29.9
|
1.0
|
O3B
|
D:ADP402
|
4.0
|
24.7
|
1.0
|
O2A
|
D:ADP402
|
4.1
|
24.7
|
1.0
|
O3A
|
D:ADP402
|
4.3
|
24.7
|
1.0
|
CD
|
D:GLN137
|
4.4
|
33.8
|
1.0
|
O1B
|
D:ADP402
|
4.5
|
24.7
|
1.0
|
OD2
|
D:ASP154
|
4.6
|
29.9
|
1.0
|
NE2
|
D:GLN137
|
4.6
|
33.8
|
1.0
|
CA
|
D:GLY156
|
4.6
|
28.3
|
1.0
|
OD2
|
D:ASP11
|
4.6
|
30.9
|
1.0
|
CG
|
D:ASP154
|
4.7
|
29.9
|
1.0
|
PA
|
D:ADP402
|
4.9
|
24.7
|
1.0
|
|
Magnesium binding site 5 out
of 6 in 8cco
Go back to
Magnesium Binding Sites List in 8cco
Magnesium binding site 5 out
of 6 in the Jas-Stabilized F-Actinii From Plasmodium Falciparum
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Jas-Stabilized F-Actinii From Plasmodium Falciparum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg403
b:24.4
occ:1.00
|
O2B
|
E:ADP402
|
2.0
|
29.6
|
1.0
|
PB
|
E:ADP402
|
3.5
|
29.6
|
1.0
|
OE1
|
E:GLN137
|
3.8
|
35.2
|
1.0
|
OD1
|
E:ASP154
|
4.0
|
33.3
|
1.0
|
O3B
|
E:ADP402
|
4.0
|
29.6
|
1.0
|
O2A
|
E:ADP402
|
4.1
|
29.6
|
1.0
|
O3A
|
E:ADP402
|
4.3
|
29.6
|
1.0
|
CD
|
E:GLN137
|
4.4
|
35.2
|
1.0
|
O1B
|
E:ADP402
|
4.5
|
29.6
|
1.0
|
OD2
|
E:ASP154
|
4.6
|
33.3
|
1.0
|
NE2
|
E:GLN137
|
4.6
|
35.2
|
1.0
|
CA
|
E:GLY156
|
4.6
|
30.5
|
1.0
|
OD2
|
E:ASP11
|
4.6
|
33.7
|
1.0
|
CG
|
E:ASP154
|
4.7
|
33.3
|
1.0
|
PA
|
E:ADP402
|
4.9
|
29.6
|
1.0
|
|
Magnesium binding site 6 out
of 6 in 8cco
Go back to
Magnesium Binding Sites List in 8cco
Magnesium binding site 6 out
of 6 in the Jas-Stabilized F-Actinii From Plasmodium Falciparum
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Jas-Stabilized F-Actinii From Plasmodium Falciparum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg403
b:29.2
occ:1.00
|
O2B
|
F:ADP402
|
2.0
|
32.9
|
1.0
|
PB
|
F:ADP402
|
3.5
|
32.9
|
1.0
|
OE1
|
F:GLN137
|
3.8
|
34.7
|
1.0
|
OD1
|
F:ASP154
|
4.0
|
31.9
|
1.0
|
O3B
|
F:ADP402
|
4.0
|
32.9
|
1.0
|
O2A
|
F:ADP402
|
4.1
|
32.9
|
1.0
|
O3A
|
F:ADP402
|
4.3
|
32.9
|
1.0
|
CD
|
F:GLN137
|
4.4
|
34.7
|
1.0
|
O1B
|
F:ADP402
|
4.5
|
32.9
|
1.0
|
OD2
|
F:ASP154
|
4.6
|
31.9
|
1.0
|
NE2
|
F:GLN137
|
4.6
|
34.7
|
1.0
|
CA
|
F:GLY156
|
4.6
|
31.9
|
1.0
|
OD2
|
F:ASP11
|
4.6
|
34.1
|
1.0
|
CG
|
F:ASP154
|
4.7
|
31.9
|
1.0
|
PA
|
F:ADP402
|
4.9
|
32.9
|
1.0
|
|
Reference:
A.J.Lopez,
M.Andreadaki,
J.Vahokoski,
E.Deligianni,
L.J.Calder,
S.Camerini,
A.Freitag,
U.Bergmann,
P.B.Rosenthal,
I.Siden-Kiamos,
I.Kursula.
Structure and Function of Plasmodium Actin II in the Parasite Mosquito Stages To Be Published.
Page generated: Thu Oct 3 20:35:41 2024
|