Magnesium in PDB 8cep: ROUND2 30S Head (No Antibiotic)

The structure of ROUND2 30S Head (No Antibiotic) also contains other interesting chemical elements:

Potassium

(K)

25 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 54;

Binding sites:

The binding sites of Magnesium atom in the ROUND2 30S Head (No Antibiotic) (pdb code 8cep). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 54 binding sites of Magnesium where determined in the ROUND2 30S Head (No Antibiotic), PDB code: 8cep:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 54 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1604 b:19.2 occ:1.00 OP1 A:C578 1.9 20.2 1.0 O A:HOH1734 2.0 19.3 1.0 O A:HOH1997 2.0 18.4 1.0 O A:HOH2203 2.1 20.5 1.0 O A:HOH3073 2.1 20.1 1.0 O A:HOH2464 2.1 18.2 1.0 P A:C578 3.2 17.9 1.0 O3' A:G577 3.4 19.8 1.0 OP2 A:C576 3.8 23.9 1.0 OP1 A:U820 4.1 22.5 1.0 O A:HOH3117 4.1 53.5 1.0 OP2 A:C817 4.2 21.4 1.0 OP2 A:C578 4.2 19.4 1.0 O5' A:C578 4.2 19.7 1.0 O A:HOH2378 4.3 33.6 1.0 C5' A:C578 4.3 20.8 1.0 C5' A:G821 4.4 22.9 1.0 O A:HOH1841 4.5 35.4 1.0 O3' A:G575 4.6 23.4 1.0 O A:HOH3303 4.6 47.3 1.0 O2' A:G575 4.7 22.0 1.0 C4' A:G821 4.7 22.0 1.0 P A:C576 4.8 21.1 1.0 C3' A:G577 4.8 18.6 1.0 OP1 A:C817 4.9 19.9 1.0 O A:HOH2549 4.9 22.7 1.0 P A:C817 5.0 18.9 1.0

Magnesium binding site 2 out of 54 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1605 b:19.9 occ:1.00 OP2 A:C352 1.9 23.2 1.0 O A:HOH2533 2.0 17.6 1.0 O A:HOH2702 2.1 18.7 1.0 O A:HOH2929 2.1 20.4 1.0 O A:HOH2992 2.1 22.1 1.0 O A:HOH1711 2.1 19.1 1.0 P A:C352 3.3 22.4 1.0 O2 A:C330 3.5 28.3 1.0 O A:HOH1786 3.8 32.1 1.0 O A:HOH3013 3.9 32.1 1.0 O5' A:C352 4.0 22.9 1.0 O4' A:G331 4.1 21.2 1.0 OP1 A:C352 4.1 22.5 1.0 N7 A:G354 4.1 16.6 1.0 O4' A:C352 4.1 23.0 1.0 N1 A:A59 4.2 17.4 1.0 OP1 A:G354 4.4 22.2 1.0 O A:HOH2288 4.4 37.8 1.0 O3' A:G351 4.4 26.0 1.0 N6 A:A59 4.5 17.5 1.0 C8 A:G354 4.6 16.6 1.0 C1' A:G331 4.6 20.3 1.0 C3' A:G351 4.6 29.6 1.0 C2 A:C330 4.7 26.7 1.0 C4' A:C352 4.7 22.7 1.0 C6 A:A59 4.9 16.9 1.0 C5' A:C352 5.0 22.1 1.0

Magnesium binding site 3 out of 54 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1606 b:22.9 occ:1.00 OP1 A:A547 1.9 24.2 1.0 O A:HOH3037 2.0 23.9 1.0 O A:HOH2375 2.0 21.6 1.0 O A:HOH3064 2.1 20.7 1.0 O A:HOH3078 2.1 24.7 1.0 O A:HOH2902 2.1 23.9 1.0 P A:A547 3.3 22.2 1.0 OP2 A:A547 3.9 23.8 1.0 OP1 A:G548 3.9 26.9 1.0 O A:HOH2663 4.1 30.7 1.0 N7 A:G402 4.1 21.4 1.0 C5' A:A547 4.3 22.3 1.0 O5' A:A547 4.3 21.4 1.0 O A:HOH1818 4.3 39.4 1.0 O A:HOH2284 4.3 28.9 1.0 O3' A:A546 4.3 23.7 1.0 O5' A:G548 4.3 24.9 1.0 N4 A:C403 4.4 24.2 1.0 O6 A:G402 4.4 24.0 1.0 O A:HOH3153 4.4 37.1 1.0 N4 A:C401 4.8 18.9 1.0 C4' A:A547 4.8 22.1 1.0 P A:G548 4.8 23.8 1.0 C5 A:C401 4.9 20.2 1.0 C5 A:G402 4.9 20.7 1.0 C4 A:C401 5.0 19.2 1.0

Magnesium binding site 4 out of 54 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1607 b:23.6 occ:1.00 O A:HOH2291 1.9 24.1 1.0 O L:HOH238 2.0 22.9 1.0 O A:HOH3079 2.1 23.7 1.0 O A:HOH2841 2.1 25.2 1.0 O A:HOH3334 2.1 24.5 1.0 N7 A:G362 2.2 20.8 1.0 C8 A:G362 3.1 20.4 1.0 C5 A:G362 3.3 19.9 1.0 O6 A:G362 3.6 21.9 1.0 C6 A:G362 3.8 20.8 1.0 O A:HOH1908 3.9 38.6 1.0 N7 A:G361 4.0 23.5 1.0 O A:HOH2232 4.1 23.4 1.0 N9 A:G362 4.3 21.0 1.0 OP2 A:G361 4.4 31.1 1.0 C8 A:G361 4.4 23.5 1.0 C4 A:G362 4.4 20.5 1.0 OP2 A:G362 4.5 25.5 1.0 NH2 L:ARG31 4.8 37.8 1.0 O A:HOH1784 4.9 36.5 1.0 OP2 A:A364 5.0 25.6 1.0

Magnesium binding site 5 out of 54 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1608 b:28.0 occ:1.00 O A:HOH1992 2.0 27.0 1.0 O A:HOH1888 2.0 27.1 1.0 O A:HOH1810 2.0 25.6 1.0 O A:HOH1762 2.1 30.0 1.0 O A:HOH3331 2.1 32.7 1.0 O A:HOH3218 2.1 26.5 1.0 OP2 A:G731 3.9 22.6 1.0 OP1 A:G730 4.1 18.2 1.0 O3' A:G1526 4.1 20.3 1.0 OP1 A:G731 4.2 22.6 1.0 O A:HOH3351 4.2 43.4 1.0 OP1 A:U1527 4.2 22.3 1.0 OP2 A:A816 4.3 19.8 1.0 P A:G731 4.4 21.3 1.0 N1 A:A814 4.4 16.5 1.0 O2' A:G1526 4.4 18.9 1.0 O A:HOH2424 4.5 45.6 1.0 O3' A:G730 4.6 19.2 1.0 C5' A:G730 4.6 16.8 1.0 C2 A:A814 4.7 16.3 1.0 O2' A:A816 4.7 16.7 1.0 C5' A:U1527 4.8 20.2 1.0 P A:U1527 4.9 19.7 1.0

Magnesium binding site 6 out of 54 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1609 b:28.3 occ:1.00 O A:HOH3069 2.0 30.9 1.0 O A:HOH2387 2.0 28.8 1.0 O A:HOH3342 2.1 26.9 1.0 O K:HOH216 2.1 27.9 1.0 O A:HOH3085 2.1 27.5 1.0 O A:HOH2080 2.1 25.4 1.0 O4 A:U798 3.9 29.0 1.0 O6 A:G800 4.0 21.3 1.0 O A:HOH2975 4.0 32.3 1.0 O6 A:G799 4.2 28.0 1.0 O A:HOH2666 4.3 26.1 1.0 O A:HOH2651 4.3 41.5 1.0 OP2 A:A781 4.3 23.7 1.0 O A:HOH2133 4.4 36.1 1.0 O A:HOH3099 4.4 46.9 1.0 O A:HOH2228 4.5 31.8 1.0 C6 A:G800 4.5 21.1 1.0 N7 A:G799 4.5 27.8 1.0 C4 A:U798 4.7 26.7 1.0 N1 A:G800 4.7 19.6 1.0 CE K:LYS125 4.7 37.1 1.0 NZ K:LYS125 4.8 34.8 1.0 C5 A:U798 4.8 27.7 1.0 OP1 A:A781 4.9 23.7 1.0 P A:A781 5.0 21.6 1.0

Magnesium binding site 7 out of 54 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1610 b:23.1 occ:1.00 O A:HOH1852 2.0 22.3 1.0 O A:HOH3104 2.0 22.3 1.0 O A:HOH3354 2.1 24.8 1.0 O A:HOH3041 2.1 21.8 1.0 N7 A:G324 2.1 18.9 1.0 O A:HOH3232 2.4 29.8 1.0 C8 A:G324 3.1 17.9 1.0 C5 A:G324 3.2 17.9 1.0 O6 A:G324 3.4 19.5 1.0 C6 A:G324 3.6 17.7 1.0 O A:HOH3051 4.0 49.3 1.0 O A:HOH1851 4.1 34.0 1.0 O A:HOH2260 4.2 26.8 1.0 OP2 A:U323 4.3 20.5 1.0 N9 A:G324 4.3 18.6 1.0 C4 A:G324 4.3 17.8 1.0 O T:HOH111 4.3 36.5 1.0 C5 A:U323 4.4 17.0 1.0 O A:HOH2046 4.5 38.4 1.0 OP2 A:G326 4.6 22.5 1.0 OP2 A:G324 4.6 22.9 1.0 C6 A:U323 4.8 17.1 1.0 O A:HOH3309 5.0 42.6 1.0

Magnesium binding site 8 out of 54 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1611 b:33.9 occ:1.00 O A:HOH3345 1.9 38.2 1.0 O A:HOH2177 2.0 32.1 1.0 O A:HOH1940 2.1 33.4 1.0 O A:HOH3312 2.1 34.8 1.0 O A:HOH2319 2.1 31.4 1.0 O A:HOH2933 2.1 32.4 1.0 OP2 A:G450 3.9 29.0 1.0 N7 A:G481 4.0 24.3 1.0 N7 A:G450 4.3 24.2 1.0 O6 A:G481 4.3 26.8 1.0 OP2 A:G449 4.3 44.1 1.0 O A:HOH2461 4.4 34.3 1.0 O2' A:A451 4.6 38.4 1.0 N7 A:G449 4.6 28.6 1.0 C8 A:G449 4.8 29.5 1.0 O A:HOH2885 4.8 58.9 1.0 C5 A:G481 4.8 23.4 1.0 C8 A:G450 4.8 25.9 1.0 C8 A:G481 4.9 23.9 1.0 C6 A:G481 4.9 24.7 1.0

Magnesium binding site 9 out of 54 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1612 b:24.1 occ:1.00 OP2 A:A768 2.0 21.7 1.0 O A:HOH3346 2.0 28.6 1.0 O A:HOH2268 2.0 26.1 1.0 O A:HOH2962 2.1 27.7 1.0 O A:HOH2598 2.1 23.4 1.0 O A:HOH2488 2.1 27.7 1.0 P A:A768 3.4 19.4 1.0 O5' A:A768 4.0 20.1 1.0 OP1 A:U804 4.1 25.4 1.0 N7 A:A768 4.1 16.0 1.0 O A:HOH1751 4.1 24.6 1.0 C8 A:A768 4.2 16.3 1.0 O A:HOH2202 4.3 47.1 1.0 OP1 A:A768 4.4 22.9 1.0 O3' A:A767 4.4 19.7 1.0 N7 A:G769 4.5 17.7 1.0 C3' A:A767 4.5 18.0 1.0 OP2 A:C805 4.6 28.7 1.0 OP2 A:A767 4.6 21.4 1.0 C5' A:U804 4.6 23.6 1.0 O5' A:A767 4.7 19.6 1.0

Magnesium binding site 10 out of 54 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1613 b:20.0 occ:1.00 OP2 A:A1500 1.9 21.4 1.0 OP2 A:G1505 2.0 20.6 1.0 OP2 A:A1499 2.1 24.0 1.0 O A:HOH2506 2.1 17.8 1.0 O A:HOH2110 2.1 18.9 1.0 O A:HOH3204 2.1 20.3 1.0 P A:A1499 3.2 24.1 1.0 P A:G1505 3.3 19.7 1.0 O3' A:UR31498 3.3 25.3 1.0 P A:A1500 3.4 20.6 1.0 O3' A:G1504 3.7 21.2 1.0 OP1 A:G1505 3.9 20.8 1.0 O3' A:A1499 4.0 22.6 1.0 N1 A:KSG1603 4.0 29.5 1.0 C3' A:A1499 4.1 23.2 1.0 O5' A:A1499 4.1 24.5 1.0 O A:HOH2299 4.1 23.4 1.0 O6 A:KSG1603 4.2 33.6 1.0 O2' A:G1504 4.2 20.7 1.0 O5' A:A1500 4.2 21.8 1.0 O2' A:UR31498 4.3 27.2 1.0 OP1 A:A1500 4.3 21.6 1.0 C12 A:KSG1603 4.4 32.4 1.0 OP1 A:A1499 4.4 27.1 1.0 N7 A:A1500 4.5 24.0 1.0 O A:HOH3151 4.5 22.4 1.0 O A:HOH3205 4.5 25.3 1.0 O5' A:G1505 4.5 22.5 1.0 C3' A:UR31498 4.6 26.2 1.0 C1 A:KSG1603 4.6 30.5 1.0 C8 A:A1500 4.7 23.8 1.0 C5' A:A1499 4.8 24.4 1.0 C3' A:G1504 4.9 21.8 1.0

H.Paternoga, C.Crowe-Mcauliffe, L.V.Bock, T.O.Koller, M.Morici, B.Beckert, A.G.Myasnikov, H.Grubmueller, J.Novacek, D.N.Wilson. Structural Conservation of Antibiotic Interaction with Ribosomes To Be Published.