Magnesium in PDB 8ceu: Retapamulin and Capreomycin Bound to the 50S Subunit

The structure of Retapamulin and Capreomycin Bound to the 50S Subunit also contains other interesting chemical elements:

Potassium	(K)	81 atoms
Zinc	(Zn)	1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 210; Page 22, Binding sites: 211 - 220;

Binding sites:

The binding sites of Magnesium atom in the Retapamulin and Capreomycin Bound to the 50S Subunit (pdb code 8ceu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 220 binding sites of Magnesium where determined in the Retapamulin and Capreomycin Bound to the 50S Subunit, PDB code: 8ceu:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 220 in the Retapamulin and Capreomycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Retapamulin and Capreomycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg3002 b:18.8 occ:1.00 OP2 a:C946 2.0 20.7 1.0 OP2 a:A945 2.0 19.2 1.0 O a:HOH7584 2.1 19.7 1.0 O a:HOH8218 2.1 20.3 1.0 O a:HOH7734 2.1 20.2 1.0 O a:HOH6741 2.1 19.7 1.0 P a:A945 3.2 17.9 1.0 P a:C946 3.4 19.1 1.0 O3' a:C944 3.4 18.0 1.0 O a:HOH5437 3.9 30.5 1.0 OP1 a:C946 4.0 23.0 1.0 O a:HOH7979 4.1 40.6 1.0 O5' a:C946 4.1 19.4 1.0 O5' a:A945 4.1 19.8 1.0 O a:HOH5787 4.2 25.7 1.0 O2' a:C944 4.2 18.7 1.0 C5' a:A945 4.3 20.4 1.0 OP2 a:G822 4.3 21.2 1.0 C4' a:A945 4.3 20.8 1.0 OP1 a:A945 4.4 18.2 1.0 O2' a:A821 4.4 20.3 1.0 O a:HOH6807 4.4 25.1 1.0 O3' a:A945 4.4 21.5 1.0 O a:HOH4770 4.4 41.9 1.0 O a:HOH8363 4.5 16.6 1.0 O3' a:A821 4.5 20.0 1.0 C3' a:C944 4.7 17.7 1.0 C3' a:A945 4.7 20.9 1.0 C2' a:C944 4.9 18.3 1.0

Magnesium binding site 2 out of 220 in the Retapamulin and Capreomycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Retapamulin and Capreomycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg3003 b:37.6 occ:1.00 O a:HOH9090 1.9 37.3 1.0 O a:HOH5032 2.0 35.3 1.0 O a:HOH9024 2.1 38.8 1.0 O a:HOH7260 2.1 36.2 1.0 O a:HOH9071 2.1 40.2 1.0 O a:HOH4435 2.1 34.0 1.0 O a:HOH7700 4.0 48.0 1.0 N7 a:G493 4.1 26.2 1.0 O6 a:G493 4.2 28.0 1.0 OP2 a:A492 4.3 37.7 1.0 N7 a:G494 4.3 25.6 1.0 O6 a:G494 4.4 25.5 1.0 O a:HOH6875 4.4 40.6 1.0 C5 a:G493 4.8 26.4 1.0 C6 a:G493 4.8 25.7 1.0

Magnesium binding site 3 out of 220 in the Retapamulin and Capreomycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Retapamulin and Capreomycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg3004 b:28.5 occ:1.00 O a:HOH5292 2.0 27.4 1.0 O a:HOH5305 2.1 32.2 1.0 O a:HOH8864 2.1 28.3 1.0 O a:HOH3983 2.1 31.4 1.0 O a:HOH4071 2.1 31.8 1.0 O a:HOH4670 2.3 39.4 1.0 OP2 a:A28 4.0 23.9 1.0 O6 a:G474 4.1 24.9 1.0 O a:HOH6832 4.2 36.0 1.0 OP2 a:A447 4.2 28.3 1.0 O4 a:U29 4.2 21.6 1.0 O a:HOH8314 4.3 42.0 1.0 O6 a:G30 4.3 24.6 1.0 C5 a:U29 4.3 20.7 1.0 O a:HOH6325 4.3 46.1 1.0 O6 a:G473 4.4 28.2 1.0 OP2 a:U29 4.5 25.1 1.0 O a:HOH8765 4.6 55.1 1.0 C4 a:U29 4.6 20.2 1.0 O p:HOH317 4.6 40.7 1.0 N4 a:C31 4.7 20.5 1.0 O2' a:A447 4.8 23.6 1.0 O a:HOH3711 4.9 35.0 1.0 C2' a:A447 5.0 24.0 1.0

Magnesium binding site 4 out of 220 in the Retapamulin and Capreomycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Retapamulin and Capreomycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg3005 b:36.8 occ:1.00 OP2 a:A218 2.0 36.2 1.0 O a:HOH4746 2.1 36.2 1.0 O a:HOH6414 2.1 36.7 1.0 O a:HOH7186 2.1 32.5 1.0 O a:HOH7403 2.1 40.6 1.0 O a:HOH5535 2.1 38.5 1.0 P a:A218 3.4 34.6 1.0 N6 a:A219 3.9 32.8 1.0 N7 a:A218 4.0 35.6 1.0 O5' a:A218 4.0 36.1 1.0 OP1 a:A428 4.2 46.5 1.0 C8 a:A218 4.2 36.2 1.0 O5' a:A217 4.3 38.4 1.0 N7 a:A219 4.3 32.6 1.0 OP1 a:A218 4.4 39.4 1.0 O3' a:A217 4.4 35.6 1.0 O6 a:G220 4.5 34.0 1.0 OP1 a:A217 4.5 41.1 1.0 C3' a:A217 4.5 33.8 1.0 OP2 a:A217 4.6 38.7 1.0 P a:A217 4.7 37.0 1.0 OP2 a:U427 4.8 45.5 1.0 C6 a:A219 4.9 33.1 1.0 C5' a:A217 4.9 37.3 1.0 C5 a:A219 5.0 32.4 1.0

Magnesium binding site 5 out of 220 in the Retapamulin and Capreomycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Retapamulin and Capreomycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg3006 b:40.7 occ:1.00 OP1 a:U419 2.0 32.8 1.0 O a:HOH5853 2.1 45.8 1.0 O a:HOH7092 2.1 39.6 1.0 O a:HOH7215 2.1 39.9 1.0 O a:HOH4506 2.1 40.0 1.0 P a:U419 3.5 31.1 1.0 O3' a:C418 4.0 31.2 1.0 O a:HOH6633 4.0 51.5 1.0 C5' a:U419 4.1 30.3 1.0 O a:HOH5832 4.1 59.6 1.0 N7 a:G230 4.2 33.3 1.0 O5' a:U419 4.2 30.8 1.0 O a:HOH8415 4.4 34.9 1.0 O a:HOH4561 4.6 35.9 1.0 OP2 a:U419 4.6 33.3 1.0 C8 a:G230 4.7 34.0 1.0

Magnesium binding site 6 out of 220 in the Retapamulin and Capreomycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Retapamulin and Capreomycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg3007 b:18.9 occ:1.00 OP2 a:G450 1.9 20.4 1.0 O a:HOH5088 2.0 19.5 1.0 O a:HOH7659 2.1 19.5 1.0 O e:HOH408 2.1 18.1 1.0 O a:HOH8200 2.1 21.3 1.0 O a:HOH5804 2.1 17.4 1.0 P a:G450 3.4 18.6 1.0 O a:HOH5201 3.7 33.7 1.0 O e:GLY81 3.7 21.1 1.0 O a:HOH8528 3.7 39.9 1.0 O a:HOH4059 3.9 20.3 1.0 OP2 a:G452 3.9 24.6 1.0 O5' a:G450 4.1 20.1 1.0 OP1 a:G450 4.2 20.5 1.0 O e:SER80 4.2 22.2 1.0 OP1 a:A449 4.2 22.6 1.0 OP2 a:U451 4.3 25.0 1.0 C e:SER80 4.4 20.0 1.0 O3' a:A449 4.4 19.4 1.0 OP2 a:A449 4.5 22.5 1.0 O a:HOH8778 4.6 33.0 1.0 CA e:SER80 4.6 19.4 1.0 O5' a:A449 4.7 20.9 1.0 P a:A449 4.7 20.0 1.0 C e:GLY81 4.8 20.6 1.0 C3' a:A449 4.8 19.4 1.0 N e:GLY81 5.0 19.1 1.0 CG2 e:VAL52 5.0 23.6 1.0

Magnesium binding site 7 out of 220 in the Retapamulin and Capreomycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Retapamulin and Capreomycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg3008 b:16.6 occ:1.00 OP1 a:A453 2.0 18.9 1.0 O6 a:G450 2.0 18.1 1.0 O a:HOH6909 2.1 16.4 1.0 O a:HOH6623 2.1 16.7 1.0 O a:HOH7083 2.1 15.7 1.0 O a:HOH7768 2.1 18.1 1.0 C6 a:G450 3.1 17.0 1.0 P a:A453 3.3 18.5 1.0 N7 a:G450 3.8 16.9 1.0 C5 a:G450 3.8 18.3 1.0 K a:K3257 3.9 24.6 1.0 O a:HOH3315 4.0 31.9 1.0 OP2 a:A453 4.0 20.0 1.0 O5' a:A453 4.0 19.6 1.0 O a:HOH8866 4.0 27.3 1.0 N7 a:A449 4.2 18.9 1.0 O a:HOH3632 4.2 28.0 1.0 C5' a:A453 4.3 20.6 1.0 O a:HOH8778 4.3 33.0 1.0 N1 a:G450 4.3 17.0 1.0 OP1 a:A454 4.3 24.2 1.0 O a:HOH3857 4.4 20.0 1.0 O3' a:G452 4.5 20.3 1.0 OP2 a:A449 4.5 22.5 1.0 O a:HOH3850 4.6 34.6 1.0 N6 a:A449 4.6 18.9 1.0 O a:HOH5201 4.7 33.7 1.0 C5' a:U448 4.8 24.4 1.0 C5 a:A449 5.0 18.4 1.0

Magnesium binding site 8 out of 220 in the Retapamulin and Capreomycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Retapamulin and Capreomycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg3009 b:25.6 occ:1.00 OP1 a:A526 1.9 26.5 1.0 OP1 a:C527 1.9 24.5 1.0 O a:HOH5619 1.9 28.0 1.0 O a:HOH5687 2.0 25.7 1.0 O a:HOH7802 2.1 27.8 1.0 O a:HOH6420 2.1 27.2 1.0 P a:A526 3.3 24.1 1.0 P a:C527 3.4 22.9 1.0 OP2 a:A526 4.0 26.1 1.0 O5' a:A526 4.0 24.4 1.0 OP2 a:C527 4.1 25.2 1.0 O5' a:C527 4.2 24.2 1.0 OP1 a:A528 4.3 26.0 1.0 C5' a:A526 4.3 24.4 1.0 O3' a:A526 4.4 24.1 1.0 O3' a:U525 4.4 25.0 1.0 O a:HOH6639 4.4 47.8 1.0 C5' a:C527 4.5 23.8 1.0 C3' a:A526 4.6 23.1 1.0 C3' a:C527 4.7 25.1 1.0 O a:HOH4392 4.8 39.2 1.0 O a:HOH8158 4.8 47.9 1.0

Magnesium binding site 9 out of 220 in the Retapamulin and Capreomycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Retapamulin and Capreomycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg3010 b:30.1 occ:1.00 O a:HOH4676 2.0 29.0 1.0 O a:HOH4907 2.0 27.5 1.0 O a:HOH9054 2.1 30.6 1.0 O a:HOH7689 2.1 29.4 1.0 O a:HOH7199 2.1 29.5 1.0 O a:HOH3933 2.1 30.0 1.0 O a:HOH6394 3.8 35.6 1.0 O a:HOH4403 3.9 42.7 1.0 O a:HOH6280 3.9 41.1 1.0 OP2 a:C560 4.0 27.9 1.0 OP1 a:A1008 4.1 26.6 1.0 OP1 a:C560 4.1 28.7 1.0 O a:HOH8842 4.2 40.9 1.0 O a:HOH9041 4.3 48.6 1.0 O a:HOH8219 4.3 38.2 1.0 O a:HOH6705 4.3 30.9 1.0 O i:HOH220 4.3 51.6 1.0 OP1 a:G2038 4.4 23.3 1.0 OP1 a:G559 4.5 30.0 1.0 P a:C560 4.5 25.6 1.0

Magnesium binding site 10 out of 220 in the Retapamulin and Capreomycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Retapamulin and Capreomycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg3011 b:16.1 occ:1.00 OP1 a:U567 2.0 17.7 1.0 O a:HOH7546 2.1 16.5 1.0 O a:HOH8052 2.1 16.6 1.0 O a:HOH5501 2.1 16.4 1.0 O a:HOH4241 2.1 17.3 1.0 O a:HOH3936 2.1 17.5 1.0 P a:U567 3.3 17.1 1.0 O3' a:U566 3.7 17.2 1.0 O a:HOH8317 4.0 23.4 1.0 O4 a:U810 4.1 18.0 1.0 OP2 a:G808 4.1 18.2 1.0 C5' a:U567 4.2 17.4 1.0 O5' a:U567 4.2 17.5 1.0 N7 a:G809 4.2 15.5 1.0 OP2 a:G809 4.3 18.5 1.0 O a:HOH4645 4.4 19.8 1.0 O k:HOH217 4.4 20.8 1.0 OP2 a:U567 4.4 17.8 1.0 O a:HOH8051 4.5 33.9 1.0 ND1 k:HIS35 4.6 27.6 1.0 C8 a:G809 4.9 14.7 1.0 O a:HOH5282 4.9 22.1 1.0

H.Paternoga, C.Crowe-Mcauliffe, L.V.Bock, T.O.Koller, M.Morici, B.Beckert, A.G.Myasnikov, H.Grubmueller, J.Novacek, D.N.Wilson. Structural Conservation of Antibiotic Interaction with Ribosomes To Be Published.