Magnesium in PDB 8dvs: Cryo-Em Structure of Rig-I Bound to the End of OHSLR30 (+Atp)

All present enzymatic activity of Cryo-Em Structure of Rig-I Bound to the End of OHSLR30 (+Atp):
3.6.4.13;

The structure of Cryo-Em Structure of Rig-I Bound to the End of OHSLR30 (+Atp) also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of Rig-I Bound to the End of OHSLR30 (+Atp) (pdb code 8dvs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Rig-I Bound to the End of OHSLR30 (+Atp), PDB code: 8dvs:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Rig-I Bound to the End of OHSLR30 (+Atp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Rig-I Bound to the End of OHSLR30 (+Atp) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:46.6 occ:1.00 OD2 A:ASP372 2.7 22.8 1.0 OE2 A:GLU373 3.4 25.8 1.0 O2B A:ADP1003 3.7 50.7 1.0 CG A:ASP372 3.8 22.8 1.0 CE A:LYS270 4.0 36.9 1.0 OD1 A:ASP372 4.2 22.8 1.0 NZ A:LYS270 4.6 36.9 1.0 CD A:GLU373 4.6 25.8 1.0 CB A:LYS270 4.7 36.9 1.0 OG1 A:THR271 4.7 36.1 1.0

W.Wang, A.M.Pyle. The Rig-I Receptor Adopts Two Different Conformations For Distinguishing Host From Viral Rna Ligands. Mol.Cell V. 82 4131 2022.
ISSN: ISSN 1097-2765
PubMed: 36272408
DOI: 10.1016/J.MOLCEL.2022.09.029