Magnesium in PDB 8dvu: Cryo-Em Structure of Rig-I Bound to the Internal Sites of OHSLR30 (+Atp)

All present enzymatic activity of Cryo-Em Structure of Rig-I Bound to the Internal Sites of OHSLR30 (+Atp):
3.6.4.13;

The structure of Cryo-Em Structure of Rig-I Bound to the Internal Sites of OHSLR30 (+Atp) also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of Rig-I Bound to the Internal Sites of OHSLR30 (+Atp) (pdb code 8dvu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Rig-I Bound to the Internal Sites of OHSLR30 (+Atp), PDB code: 8dvu:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Rig-I Bound to the Internal Sites of OHSLR30 (+Atp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Rig-I Bound to the Internal Sites of OHSLR30 (+Atp) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:18.9 occ:1.00 O2B A:ADP1003 2.2 20.9 1.0 PB A:ADP1003 3.5 20.9 1.0 O3A A:ADP1003 3.7 20.9 1.0 OD1 A:ASP372 3.8 6.4 1.0 O1A A:ADP1003 4.0 20.9 1.0 O3B A:ADP1003 4.1 20.9 1.0 PA A:ADP1003 4.2 20.9 1.0 OG1 A:THR271 4.3 11.7 1.0 O2A A:ADP1003 4.4 20.9 1.0 OD2 A:ASP372 4.5 6.4 1.0 CG A:ASP372 4.6 6.4 1.0 O1B A:ADP1003 4.7 20.9 1.0 CE A:LYS270 4.9 12.0 1.0 OE1 A:GLU373 4.9 8.2 1.0

W.Wang, A.M.Pyle. The Rig-I Receptor Adopts Two Different Conformations For Distinguishing Host From Viral Rna Ligands. Mol.Cell V. 82 4131 2022.
ISSN: ISSN 1097-2765
PubMed: 36272408
DOI: 10.1016/J.MOLCEL.2022.09.029