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Magnesium in PDB 8dx3: Hiv-1 Reverse Transcriptase/Rilpivirine with Bound Fragment 3- Bromobenzylamine in the Thumb Subdomain
Enzymatic activity of Hiv-1 Reverse Transcriptase/Rilpivirine with Bound Fragment 3- Bromobenzylamine in the Thumb Subdomain
All present enzymatic activity of Hiv-1 Reverse Transcriptase/Rilpivirine with Bound Fragment 3- Bromobenzylamine in the Thumb Subdomain:
2.7.7.49; 2.7.7.7; 3.1.13.2; 3.1.26.13;
2.7.7.49; 2.7.7.7; 3.1.13.2; 3.1.26.13;
Protein crystallography data
The structure of Hiv-1 Reverse Transcriptase/Rilpivirine with Bound Fragment 3- Bromobenzylamine in the Thumb Subdomain, PDB code: 8dx3
was solved by
A.Chopra,
F.X.Ruiz,
J.D.Bauman,
E.Arnold,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 42.98 / 2.06 |
| Space group | C 1 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 161.984, 72.994, 109.357, 90, 100.01, 90 |
| R / Rfree (%) | 19.6 / 22.8 |
Other elements in 8dx3:
The structure of Hiv-1 Reverse Transcriptase/Rilpivirine with Bound Fragment 3- Bromobenzylamine in the Thumb Subdomain also contains other interesting chemical elements:
| Bromine | (Br) | 1 atom |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Hiv-1 Reverse Transcriptase/Rilpivirine with Bound Fragment 3- Bromobenzylamine in the Thumb Subdomain
(pdb code 8dx3). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Hiv-1 Reverse Transcriptase/Rilpivirine with Bound Fragment 3- Bromobenzylamine in the Thumb Subdomain, PDB code: 8dx3:
In total only one binding site of Magnesium was determined in the Hiv-1 Reverse Transcriptase/Rilpivirine with Bound Fragment 3- Bromobenzylamine in the Thumb Subdomain, PDB code: 8dx3:
Magnesium binding site 1 out of 1 in 8dx3
Go back to
Magnesium Binding Sites List in 8dx3
Magnesium binding site 1 out
of 1 in the Hiv-1 Reverse Transcriptase/Rilpivirine with Bound Fragment 3- Bromobenzylamine in the Thumb Subdomain
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Hiv-1 Reverse Transcriptase/Rilpivirine with Bound Fragment 3- Bromobenzylamine in the Thumb Subdomain within 5.0Å range:
|
Reference:
A.Chopra,
J.D.Bauman,
F.X.Ruiz,
E.Arnold.
Halo Library, A Tool For Rapid Identification of Ligand Binding Sites on Proteins Using Crystallographic Fragment Screening. J.Med.Chem. V. 66 6013 2023.
ISSN: ISSN 0022-2623
PubMed: 37115705
DOI: 10.1021/ACS.JMEDCHEM.2C01681
Page generated: Fri Oct 4 00:56:44 2024
ISSN: ISSN 0022-2623
PubMed: 37115705
DOI: 10.1021/ACS.JMEDCHEM.2C01681
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