Magnesium in PDB 8dy9: Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors

Enzymatic activity of Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors

All present enzymatic activity of Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors:
2.7.7.6;

Other elements in 8dy9:

The structure of Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors also contains other interesting chemical elements:

Zinc (Zn) 3 atoms
Iron (Fe) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors (pdb code 8dy9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors, PDB code: 8dy9:

Magnesium binding site 1 out of 1 in 8dy9

Go back to Magnesium Binding Sites List in 8dy9
Magnesium binding site 1 out of 1 in the Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg2002

b:40.8
occ:1.00
 OD1 D:ASP539 2.1 40.1 1.0
OD1 D:ASP537 2.5 39.1 1.0
HB3 D:ASP535 2.5 40.0 1.0
OD2 D:ASP539 2.6 40.1 1.0
CG D:ASP539 2.7 40.1 1.0
HB2 D:ASP535 3.2 40.0 1.0
CB D:ASP535 3.2 40.0 1.0
CG D:ASP537 3.3 39.1 1.0
OD2 D:ASP537 3.5 39.1 1.0
H D:ASP535 3.6 40.0 1.0
H D:ASP537 3.8 39.1 1.0
HH21 D:ARG500 4.0 36.7 1.0
CA D:ASP535 4.1 40.0 1.0
CB D:ASP539 4.2 40.1 1.0
N D:ASP535 4.2 40.0 1.0
CG D:ASP535 4.3 40.0 1.0
H D:ASP539 4.3 40.1 1.0
C D:ASP535 4.4 40.0 1.0
OD2 D:ASP535 4.6 40.0 1.0
N D:ASP537 4.6 39.1 1.0
O D:ASP535 4.6 40.0 1.0
HB2 D:ASP539 4.6 40.1 1.0
HB3 D:ASP539 4.6 40.1 1.0
N D:ASP539 4.6 40.1 1.0
CB D:ASP537 4.6 39.1 1.0
HA D:ASP539 4.7 40.1 1.0
NH2 D:ARG500 4.8 36.7 1.0
O D:ASP537 4.8 39.1 1.0
C D:ASP537 4.8 39.1 1.0
CA D:ASP539 4.8 40.1 1.0
CA D:ASP537 4.9 39.1 1.0
HH22 D:ARG500 5.0 36.7 1.0
N D:PHE536 5.0 37.2 1.0

Reference:

M.Lilic, E.A.Campbell. Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors To Be Published.
Page generated: Fri Apr 7 09:10:19 2023

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