Magnesium in PDB 8dyo: Cryo-Em Structure of Importin-4 Bound to Rangtp

The binding sites of Magnesium atom in the Cryo-Em Structure of Importin-4 Bound to Rangtp (pdb code 8dyo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Importin-4 Bound to Rangtp, PDB code: 8dyo:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Importin-4 Bound to Rangtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Importin-4 Bound to Rangtp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:67.8 occ:1.00 O2B B:GTP302 1.8 72.1 1.0 CA B:GLY24 2.3 68.9 1.0 O1G B:GTP302 2.3 72.1 1.0 N B:GLY24 2.8 68.9 1.0 PB B:GTP302 2.8 72.1 1.0 C B:GLY24 2.8 68.9 1.0 PG B:GTP302 3.0 72.1 1.0 OG1 B:THR27 3.0 68.9 1.0 O3G B:GTP302 3.0 72.1 1.0 CG2 B:THR27 3.0 68.9 1.0 O3A B:GTP302 3.2 72.1 1.0 O3B B:GTP302 3.3 72.1 1.0 O B:GLY24 3.4 68.9 1.0 N B:LYS25 3.4 68.9 1.0 N B:THR27 3.5 68.9 1.0 CB B:THR27 3.5 68.9 1.0 N B:THR26 4.0 68.9 1.0 C B:THR23 4.1 68.9 1.0 CA B:THR27 4.1 68.9 1.0 O1B B:GTP302 4.2 72.1 1.0 O2G B:GTP302 4.4 72.1 1.0 C B:THR26 4.5 68.9 1.0 C B:LYS25 4.5 68.9 1.0 CA B:LYS25 4.6 68.9 1.0 CA B:THR26 4.6 68.9 1.0 CB B:THR26 4.6 68.9 1.0 N B:THR23 4.8 68.9 1.0 PA B:GTP302 4.8 72.1 1.0 O B:THR23 4.9 68.9 1.0

N.E.Bernardes, H.Y.J.Fung, Y.Li, Z.Chen, Y.M.Chook. Structure of Importin-4 Bound to the H3-H4-ASF1 Histone-Histone Chaperone Complex. Proc.Natl.Acad.Sci.Usa V. 119 77119 2022.
ISSN: ESSN 1091-6490
PubMed: 36103578
DOI: 10.1073/PNAS.2207177119