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Magnesium in PDB 8e5k: Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 21 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part

Enzymatic activity of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 21 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part

All present enzymatic activity of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 21 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part:
2.7.7.6;

Other elements in 8e5k:

The structure of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 21 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 21 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part (pdb code 8e5k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 21 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part, PDB code: 8e5k:

Magnesium binding site 1 out of 1 in 8e5k

Go back to Magnesium Binding Sites List in 8e5k
Magnesium binding site 1 out of 1 in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 21 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 21 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1501

b:17.6
occ:1.00
 OD1 B:ASP460 1.6 14.8 1.0
OD1 B:ASP462 2.2 13.2 1.0
O3' 7:G38 2.3 20.4 1.0
OD2 B:ASP464 2.5 15.0 1.0
CG B:ASP460 2.6 14.8 1.0
OD1 B:ASP464 2.6 15.0 1.0
CG B:ASP464 2.9 15.0 1.0
HO2' 7:G38 2.9 20.4 1.0
OD2 B:ASP460 2.9 14.8 1.0
CG B:ASP462 3.1 13.2 1.0
OD2 B:ASP462 3.3 13.2 1.0
H B:ASP460 3.3 14.8 1.0
H B:ASP462 3.5 13.2 1.0
C3' 7:G38 3.6 20.4 1.0
H4' 7:G38 3.6 20.4 1.0
O2' 7:G38 3.7 20.4 1.0
HH22 B:ARG425 3.8 19.0 1.0
CB B:ASP460 3.9 14.8 1.0
N B:ASP460 4.0 14.8 1.0
NH2 B:ARG425 4.1 19.0 1.0
C4' 7:G38 4.1 20.4 1.0
HH21 B:ARG425 4.1 19.0 1.0
H3' 7:G38 4.2 20.4 1.0
C2' 7:G38 4.2 20.4 1.0
H5'' 7:G38 4.2 20.4 1.0
C B:ASP460 4.2 14.8 1.0
CA B:ASP460 4.3 14.8 1.0
O B:ASP460 4.3 14.8 1.0
CB B:ASP464 4.3 15.0 1.0
N B:ASP462 4.4 13.2 1.0
HB2 B:ASP460 4.4 14.8 1.0
CB B:ASP462 4.5 13.2 1.0
HB3 B:ASP460 4.5 14.8 1.0
HA B:ALA459 4.5 16.6 1.0
H2' 7:G38 4.6 20.4 1.0
HB2 B:ASP464 4.6 15.0 1.0
H B:ASP464 4.7 15.0 1.0
C5' 7:G38 4.7 20.4 1.0
CZ B:ARG425 4.7 19.0 1.0
N B:PHE461 4.8 12.0 1.0
HA B:ASP464 4.8 15.0 1.0
CA B:ASP462 4.9 13.2 1.0
HB3 B:ASP462 4.9 13.2 1.0
HB3 B:ASP464 4.9 15.0 1.0
HH12 B:ARG425 4.9 19.0 1.0
N B:ASP464 4.9 15.0 1.0
CA B:ASP464 5.0 15.0 1.0

Reference:

V.Molodtsov, C.Wang, E.Firlar, J.T.Kaelber, R.H.Ebright. Structural Basis of Rho-Dependent Transcription Termination Biorxiv 2022.
DOI: 10.1101/2022.08.29.505764
Page generated: Fri Oct 4 01:01:37 2024

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