Atomistry » Magnesium » PDB 8e1h-8ea4 » 8e5o
Atomistry »
  Magnesium »
    PDB 8e1h-8ea4 »
      8e5o »

Magnesium in PDB 8e5o: Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 24 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part

Enzymatic activity of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 24 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part

All present enzymatic activity of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 24 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part:
2.7.7.6;

Other elements in 8e5o:

The structure of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 24 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 24 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part (pdb code 8e5o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 24 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part, PDB code: 8e5o:

Magnesium binding site 1 out of 1 in 8e5o

Go back to Magnesium Binding Sites List in 8e5o
Magnesium binding site 1 out of 1 in the Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 24 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 24 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1501

b:17.6
occ:1.00
 OD1 B:ASP460 1.6 14.8 1.0
OD1 B:ASP462 2.2 13.2 1.0
O3' 7:G41 2.3 20.4 1.0
OD2 B:ASP464 2.5 15.0 1.0
CG B:ASP460 2.6 14.8 1.0
OD1 B:ASP464 2.6 15.0 1.0
CG B:ASP464 2.9 15.0 1.0
HO2' 7:G41 2.9 20.4 1.0
OD2 B:ASP460 2.9 14.8 1.0
CG B:ASP462 3.1 13.2 1.0
OD2 B:ASP462 3.3 13.2 1.0
H B:ASP460 3.3 14.8 1.0
H B:ASP462 3.5 13.2 1.0
C3' 7:G41 3.6 20.4 1.0
H4' 7:G41 3.6 20.4 1.0
O2' 7:G41 3.7 20.4 1.0
HH22 B:ARG425 3.8 19.0 1.0
CB B:ASP460 3.9 14.8 1.0
N B:ASP460 4.0 14.8 1.0
NH2 B:ARG425 4.1 19.0 1.0
C4' 7:G41 4.1 20.4 1.0
HH21 B:ARG425 4.1 19.0 1.0
H3' 7:G41 4.2 20.4 1.0
C2' 7:G41 4.2 20.4 1.0
H5'' 7:G41 4.2 20.4 1.0
C B:ASP460 4.2 14.8 1.0
CA B:ASP460 4.3 14.8 1.0
O B:ASP460 4.3 14.8 1.0
CB B:ASP464 4.3 15.0 1.0
N B:ASP462 4.4 13.2 1.0
HB2 B:ASP460 4.4 14.8 1.0
CB B:ASP462 4.5 13.2 1.0
HB3 B:ASP460 4.5 14.8 1.0
HA B:ALA459 4.5 16.6 1.0
H2' 7:G41 4.6 20.4 1.0
HB2 B:ASP464 4.6 15.0 1.0
H B:ASP464 4.7 15.0 1.0
C5' 7:G41 4.7 20.4 1.0
CZ B:ARG425 4.7 19.0 1.0
N B:PHE461 4.8 12.0 1.0
HA B:ASP464 4.8 15.0 1.0
CA B:ASP462 4.9 13.2 1.0
HB3 B:ASP462 4.9 13.2 1.0
HB3 B:ASP464 4.9 15.0 1.0
HH12 B:ARG425 4.9 19.0 1.0
N B:ASP464 4.9 15.0 1.0
CA B:ASP464 5.0 15.0 1.0

Reference:

V.Molodtsov, C.Wang, E.Firlar, J.T.Kaelber, R.H.Ebright. Structural Basis of Rho-Dependent Transcription Termination Biorxiv 2022.
DOI: 10.1101/2022.08.29.505764
Page generated: Fri Oct 4 01:02:31 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy