Magnesium in PDB 8e5t: Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate

All present enzymatic activity of Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate:
3.6.4.13;

The structure of Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 33;

Binding sites:

The binding sites of Magnesium atom in the Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate (pdb code 8e5t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 33 binding sites of Magnesium where determined in the Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate, PDB code: 8e5t:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 33 in the Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:48.3 occ:1.00 O C:VAL312 3.2 98.2 1.0 OP1 1:G1362 3.7 96.1 1.0 OP1 1:A1337 4.1 100.2 1.0 C C:VAL312 4.2 98.2 1.0 OP2 1:A1337 4.4 100.2 1.0 OP2 1:G1362 4.5 96.1 1.0 P 1:G1362 4.6 96.1 1.0 O C:HIS311 4.6 101.6 1.0 OP1 1:U1336 4.7 99.4 1.0 P 1:A1337 4.8 100.2 1.0 CA C:VAL312 4.9 98.2 1.0

Magnesium binding site 2 out of 33 in the Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:114.6 occ:1.00 O C:GLN304 3.1 103.4 1.0 CB C:ALA305 3.5 95.0 1.0 OP1 1:A1352 3.6 119.6 1.0 C C:GLN304 4.3 103.4 1.0 CA C:ALA305 4.5 95.0 1.0 OG1 C:THR306 4.7 98.9 1.0 C C:ALA305 4.7 95.0 1.0 N C:ALA305 4.8 95.0 1.0 P 1:A1352 4.9 119.6 1.0 O3' 1:U1351 4.9 103.8 1.0

Magnesium binding site 3 out of 33 in the Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg301 b:89.0 occ:1.00 CG F:GLN19 3.9 106.2 1.0 N2 1:G1349 4.0 95.3 1.0 OP2 1:G1349 4.1 95.3 1.0 NE2 F:GLN19 4.2 106.2 1.0 CD F:GLN19 4.6 106.2 1.0 CG F:LYS15 4.9 98.1 1.0

Magnesium binding site 4 out of 33 in the Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg3401 b:106.5 occ:1.00 OP2 1:A417 4.5 113.1 1.0

Magnesium binding site 5 out of 33 in the Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg3402 b:117.7 occ:1.00 O6 1:G499 4.8 138.2 1.0 N6 1:A498 5.0 143.1 1.0

Magnesium binding site 6 out of 33 in the Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate within 5.0Å range:

Magnesium binding site 7 out of 33 in the Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg3404 b:98.1 occ:1.00 MG 1:MG3411 4.7 127.3 1.0 OP2 1:C515 4.7 99.1 1.0 OP2 1:U571 4.8 123.1 1.0

Magnesium binding site 8 out of 33 in the Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate within 5.0Å range:

Magnesium binding site 9 out of 33 in the Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg3406 b:94.9 occ:1.00 O6 1:G1164 4.3 102.9 1.0 N6 1:A1165 4.4 99.8 1.0 N6 1:A1163 4.8 102.4 1.0

Magnesium binding site 10 out of 33 in the Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg3407 b:122.5 occ:1.00 N7 1:G1166 4.3 98.8 1.0 O4 1:U1167 4.6 96.9 1.0 OP2 1:G1166 4.6 98.8 1.0

Z.A.Sanghai, R.Piwowarczyk, A.Vanden Broeck, S.Klinge. A Co-Transcriptional Ribosome Assembly Checkpoint Controls Nascent Large Ribosomal Subunit Maturation Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-023-00947-3