Magnesium in PDB 8qwd: Apo Rechb

The binding sites of Magnesium atom in the Apo Rechb (pdb code 8qwd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Apo Rechb, PDB code: 8qwd:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Apo Rechb


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Apo Rechb within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1401 b:78.7 occ:1.00 OG A:SER1044 2.1 67.0 1.0 OD2 A:ASP878 3.0 60.4 1.0 CB A:SER1044 3.5 46.9 1.0 CG A:ASP878 3.7 72.4 1.0 O A:ARG879 3.9 59.5 1.0 OD1 A:ASP878 4.0 77.9 1.0 CA A:GLY1219 4.1 41.7 1.0 NZ A:LYS974 4.1 68.3 1.0 OD1 A:ASP1216 4.2 58.5 1.0 NH1 A:ARG1179 4.2 59.4 1.0 CA A:GLY880 4.4 61.3 1.0 N A:SER1044 4.4 52.9 1.0 MG A:MG1402 4.4 60.5 1.0 CE A:LYS974 4.4 68.7 1.0 CA A:SER1044 4.4 38.5 1.0 ND2 A:ASN1042 4.4 60.3 1.0 C A:ARG879 4.6 44.8 1.0 CG A:GLU881 4.8 80.7 1.0 N A:GLY1219 4.8 38.3 1.0 CB A:ASP878 4.8 54.1 1.0 C A:GLY1219 4.9 44.6 1.0 O A:ASP1216 4.9 64.6 1.0 N A:GLY880 4.9 48.2 1.0 N A:GLU881 5.0 77.0 1.0 C A:GLY880 5.0 66.5 1.0

Magnesium binding site 2 out of 2 in the Apo Rechb


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Apo Rechb within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1402 b:60.5 occ:1.00 OD1 A:ASP878 2.2 77.9 1.0 CE A:LYS974 2.4 68.7 1.0 OE2 A:GLU967 2.5 72.9 1.0 CG A:ASP878 2.9 72.4 1.0 O A:TRP1041 2.9 80.2 1.0 OD2 A:ASP878 3.0 60.4 1.0 CD A:LYS974 3.1 71.4 1.0 CD A:GLU967 3.4 77.9 1.0 NZ A:LYS974 3.4 68.3 1.0 OE1 A:GLU967 3.6 73.3 1.0 CD1 A:ILE1223 3.9 45.4 1.0 OG1 A:THR1043 3.9 45.3 1.0 C A:TRP1041 4.1 74.7 1.0 CB A:ASP878 4.2 54.1 1.0 MG A:MG1401 4.4 78.7 1.0 N A:ARG879 4.4 55.7 1.0 N A:THR1043 4.5 57.1 1.0 O A:ARG879 4.6 59.5 1.0 CG A:LYS974 4.6 74.8 1.0 CA A:ASP878 4.7 41.3 1.0 CA A:ASN1042 4.7 57.6 1.0 CG A:GLU967 4.7 66.9 1.0 N A:TRP1041 4.8 65.1 1.0 N A:ASN1042 4.9 63.2 1.0 CG1 A:ILE1223 4.9 32.4 1.0 O A:GLY1219 5.0 56.4 1.0

Y.Jabalera, I.Tascon, S.Samperio, J.P.Lopez-Alonso, M.Gonzalez-Lopez, A.M.Aransay, G.Abascal-Palacios, C.L.Beisel, I.Ubarretxena-Belandia, R.Jimenez-Perez. A Resurrected Ancestor of CAS12A Expands Target Access and Substrate 2 Recognition For Nucleic-Acid Editing and Detection Nature Biotechnology 2024.