Magnesium in PDB 8slg: Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound)

The structure of Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound), PDB code: 8slg was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.16 / 1.95
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	170.248, 87.108, 99.358, 90, 104.21, 90
R / Rfree (%)	17.4 / 20.1

The structure of Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound) (pdb code 8slg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound), PDB code: 8slg:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg503 b:38.8 occ:1.00 O A:ARG57 2.2 38.7 1.0 O A:VAL60 2.2 37.9 1.0 O A:VAL54 2.3 39.9 1.0 O A:HOH742 2.4 47.9 1.0 O B:HOH634 2.6 42.8 1.0 C A:VAL54 3.4 38.0 1.0 C A:ARG57 3.4 40.3 1.0 C A:VAL60 3.5 38.6 1.0 CA A:VAL54 4.0 36.1 1.0 O A:HOH649 4.1 37.0 1.0 CG1 A:VAL54 4.1 40.6 1.0 N A:VAL60 4.2 39.8 1.0 N A:ARG57 4.3 36.8 1.0 CA A:VAL60 4.3 35.9 1.0 N A:GLU58 4.4 40.7 1.0 O A:GLU58 4.4 42.9 1.0 CA A:ARG57 4.4 40.3 1.0 C A:GLU58 4.4 45.3 1.0 CA A:GLU58 4.4 45.0 1.0 N A:VAL61 4.4 37.5 1.0 O B:HOH681 4.4 51.0 1.0 N A:THR55 4.5 33.3 1.0 O A:THR55 4.5 37.0 1.0 CA A:VAL61 4.6 30.7 1.0 O A:HOH752 4.6 42.0 1.0 C A:THR55 4.6 37.9 1.0 CA A:THR55 4.7 35.1 1.0 CB A:VAL54 4.7 41.8 1.0 CB A:ARG57 4.8 36.2 1.0 OD1 B:ASN395 4.8 43.2 1.0 CG1 A:VAL61 4.8 40.4 1.0 CB A:VAL60 4.8 35.9 1.0 N A:ASP59 4.9 39.4 1.0 O A:MET53 5.0 41.3 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg506 b:37.8 occ:1.00 O B:VAL60 2.2 32.6 1.0 O B:VAL54 2.3 41.7 1.0 O B:ARG57 2.3 38.4 1.0 O B:HOH707 2.4 42.1 1.0 O A:HOH678 2.5 39.7 1.0 C B:VAL54 3.4 35.5 1.0 C B:VAL60 3.4 31.8 1.0 C B:ARG57 3.5 42.0 1.0 CA B:VAL54 3.9 35.4 1.0 CG1 B:VAL54 4.0 35.0 1.0 O B:HOH627 4.2 30.2 1.0 N B:VAL60 4.2 33.4 1.0 N B:ARG57 4.3 37.2 1.0 CA B:VAL60 4.3 29.5 1.0 N B:VAL61 4.3 30.1 1.0 O B:HOH720 4.4 41.1 1.0 CA B:ARG57 4.4 41.6 1.0 CA B:VAL61 4.4 31.0 1.0 O B:GLU58 4.4 35.7 1.0 C B:GLU58 4.4 39.9 1.0 N B:GLU58 4.5 37.4 1.0 O A:HOH700 4.5 44.6 1.0 N B:THR55 4.5 31.4 1.0 CA B:GLU58 4.5 33.9 1.0 O B:THR55 4.6 34.2 1.0 CB B:VAL54 4.7 35.9 1.0 C B:THR55 4.7 36.9 1.0 CB B:ARG57 4.7 37.9 1.0 CA B:THR55 4.7 31.3 1.0 CG1 B:VAL61 4.8 40.6 1.0 CB B:VAL60 4.8 30.2 1.0 OD1 A:ASN395 4.8 37.0 1.0 O B:MET53 4.9 40.5 1.0

L.Liu, S.Lovell, K.P.Battaile, S.Seibold. Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound) To Be Published.