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Magnesium in PDB 8slh: Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Amp Bound, Hexagonal Form)

Protein crystallography data

The structure of Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Amp Bound, Hexagonal Form), PDB code: 8slh was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.55 / 3.05
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 126.254, 126.254, 127.896, 90, 90, 120
R / Rfree (%) 23 / 28.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Amp Bound, Hexagonal Form) (pdb code 8slh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Amp Bound, Hexagonal Form), PDB code: 8slh:

Magnesium binding site 1 out of 1 in 8slh

Go back to Magnesium Binding Sites List in 8slh
Magnesium binding site 1 out of 1 in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Amp Bound, Hexagonal Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Amp Bound, Hexagonal Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:147.7
occ:1.00
O A:VAL54 2.6 84.3 1.0
O A:ARG57 2.8 93.3 1.0
O A:VAL60 3.1 83.7 1.0
C A:VAL54 3.5 79.7 1.0
C A:ARG57 3.9 85.2 1.0
CA A:THR55 4.1 79.5 1.0
CG1 A:VAL54 4.2 95.6 1.0
O A:THR55 4.2 90.8 1.0
N A:THR55 4.2 66.8 1.0
C A:THR55 4.3 75.6 1.0
C A:VAL60 4.4 84.8 1.0
CA A:VAL54 4.5 82.5 1.0
N A:ARG57 4.6 84.2 1.0
CA A:GLU58 4.8 87.1 1.0
N A:GLU58 4.8 79.7 1.0
CA A:ARG57 4.8 89.3 1.0
O A:GLU58 5.0 98.6 1.0

Reference:

S.Lovell, L.Liu, K.P.Battaile, S.Seibold. Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Amp Bound, Hexagonal Form) To Be Published.
Page generated: Fri Aug 15 15:47:54 2025

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