Magnesium in PDB 8smf: Structure of SPO1 Phage TAD2 in Complex with 1''-3' Gcadpr

The structure of Structure of SPO1 Phage TAD2 in Complex with 1''-3' Gcadpr, PDB code: 8smf was solved by A.Lu, E.Yirmiya, A.Leavitt, C.Avraham, I.Osterman, J.Garb, S.P.Antine, S.E.Mooney, S.J.Hobbs, G.Amitai, R.Sorek, P.J.Kranzusch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.06 / 1.75
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	94.389, 82.472, 90.757, 90, 107.88, 90
R / Rfree (%)	20.8 / 24.1

The binding sites of Magnesium atom in the Structure of SPO1 Phage TAD2 in Complex with 1''-3' Gcadpr (pdb code 8smf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of SPO1 Phage TAD2 in Complex with 1''-3' Gcadpr, PDB code: 8smf:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of SPO1 Phage TAD2 in Complex with 1''-3' Gcadpr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of SPO1 Phage TAD2 in Complex with 1''-3' Gcadpr within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg101 b:23.8 occ:1.00 O B:HOH156 1.9 24.9 1.0 O D:HOH208 2.1 31.7 1.0 O D:HOH217 2.1 33.9 1.0 O D:SER42 2.2 22.6 1.0 C D:SER42 3.3 24.1 1.0 CA D:SER42 3.8 22.1 1.0 O B:GLY45 3.9 27.0 1.0 OG D:SER42 4.3 31.1 1.0 N D:ASP43 4.4 22.5 1.0 O D:ALA41 4.5 26.8 1.0 CA D:GLY45 4.5 40.6 1.0 O D:ASP43 4.5 27.9 1.0 OD2 B:ASP43 4.6 61.4 1.0 C D:ASP43 4.6 24.8 1.0 N D:GLY45 4.7 36.0 1.0 CB D:SER42 4.7 24.9 1.0 O D:PHE44 4.7 37.9 1.0 CA D:ASP43 4.7 22.0 1.0 O B:ASP43 4.8 46.0 1.0 C D:PHE44 4.8 33.7 1.0 O B:HOH158 4.9 38.7 1.0 C B:GLY45 5.0 31.2 1.0 N D:SER42 5.0 21.7 1.0

Magnesium binding site 2 out of 2 in the Structure of SPO1 Phage TAD2 in Complex with 1''-3' Gcadpr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of SPO1 Phage TAD2 in Complex with 1''-3' Gcadpr within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg102 b:27.2 occ:1.00 O H:HOH210 2.0 26.6 1.0 O H:HOH213 2.1 28.5 1.0 O H:HOH217 2.1 26.8 1.0 O D:HOH209 2.2 21.1 1.0 O D:HOH221 2.2 30.2 1.0 O H:LYS4 3.5 29.7 1.0 OE1 H:GLU9 4.0 21.2 1.0 OE2 H:GLU9 4.0 23.2 1.0 O D:GLN16 4.1 21.3 1.0 CA D:GLY17 4.4 21.1 1.0 CD H:GLU9 4.4 22.1 1.0 O D:GLY17 4.5 22.6 1.0 C H:LYS4 4.6 22.0 1.0 C D:GLY17 4.7 21.3 1.0 CD H:LYS4 5.0 39.6 1.0 CE H:LYS4 5.0 28.6 1.0

E.Yirmiya, A.Leavitt, A.Lu, C.Avraham, I.Osterman, J.Garb, S.P.Antine, S.E.Mooney, S.J.Hobbs, P.J.Kranzusch, G.Amitai, R.Sorek. Phages Overcome Bacterial Immunity Via Diverse Anti-Defense Proteins To Be Published.