Magnesium in PDB 8squ: Monomeric Mapsparta Bound with Guide Rna and Target Dna Hybrid

The binding sites of Magnesium atom in the Monomeric Mapsparta Bound with Guide Rna and Target Dna Hybrid (pdb code 8squ). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Monomeric Mapsparta Bound with Guide Rna and Target Dna Hybrid, PDB code: 8squ:

Magnesium binding site 1 out of 1 in the Monomeric Mapsparta Bound with Guide Rna and Target Dna Hybrid


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Monomeric Mapsparta Bound with Guide Rna and Target Dna Hybrid within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:90.3 occ:1.00 O B:TYR506 2.0 63.7 1.0 OP2 C:U1 2.0 74.2 1.0 OP1 C:U1 2.1 80.5 1.0 O B:ILE507 2.2 72.0 1.0 C B:ILE507 2.3 67.5 1.0 P C:U1 2.3 88.5 1.0 OXT B:ILE507 2.8 63.0 1.0 CA B:ILE507 2.8 68.5 1.0 C B:TYR506 2.9 61.5 1.0 N B:ILE507 3.2 68.1 1.0 NZ B:LYS211 3.4 60.5 1.0 O5' C:U1 3.6 75.8 1.0 CA B:TYR506 4.2 56.9 1.0 CB B:ILE507 4.3 66.1 1.0 NZ B:LYS263 4.6 71.0 1.0 C5' C:U1 4.6 76.7 1.0 CE1 B:HIS207 4.7 90.9 1.0 NE2 B:HIS207 4.7 92.1 1.0 CE B:LYS485 4.8 61.3 1.0 CD1 B:ILE489 4.8 72.0 1.0 OP1 C:A3 4.8 38.2 1.0 CE B:LYS211 4.8 63.9 1.0 O B:TYR505 4.9 80.1 1.0

Z.Shen, X.Y.Yang, S.Xia, W.Huang, D.J.Taylor, K.Nakanishi, T.M.Fu. Oligomerization-Mediated Activation of A Short Prokaryotic Argonaute. Nature 2023.
ISSN: ESSN 1476-4687
PubMed: 37494956
DOI: 10.1038/S41586-023-06456-Z