Magnesium in PDB 8ssw: Crystal Structure of Dead-Box Rna Helicase DDX3X in Complex with Adp at Pre-Unwound State

All present enzymatic activity of Crystal Structure of Dead-Box Rna Helicase DDX3X in Complex with Adp at Pre-Unwound State:
3.6.4.13;

The structure of Crystal Structure of Dead-Box Rna Helicase DDX3X in Complex with Adp at Pre-Unwound State, PDB code: 8ssw was solved by H.Song, X.Ji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.75 / 2.40
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	68.611, 68.611, 213.878, 90, 90, 120
R / Rfree (%)	20.7 / 24.8

The binding sites of Magnesium atom in the Crystal Structure of Dead-Box Rna Helicase DDX3X in Complex with Adp at Pre-Unwound State (pdb code 8ssw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Dead-Box Rna Helicase DDX3X in Complex with Adp at Pre-Unwound State, PDB code: 8ssw:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Dead-Box Rna Helicase DDX3X in Complex with Adp at Pre-Unwound State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Dead-Box Rna Helicase DDX3X in Complex with Adp at Pre-Unwound State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg702 b:67.8 occ:1.00 O A:HOH818 2.0 57.1 1.0 O A:HOH846 2.0 50.1 1.0 O A:HOH819 2.0 66.2 1.0 O A:HOH812 2.0 55.0 1.0 O2B A:ADP701 2.6 58.2 1.0 O3B A:ADP701 3.5 62.8 1.0 PB A:ADP701 3.6 59.9 1.0 OD2 A:ASP347 3.7 43.1 1.0 OG1 A:THR231 3.8 60.3 1.0 OE2 A:GLU348 3.9 71.3 1.0 O2A A:ADP701 4.0 47.6 1.0 OD1 A:ASP347 4.1 58.9 1.0 CE A:LYS230 4.1 48.4 1.0 CG A:ASP347 4.3 43.0 1.0 CD A:GLU348 4.4 53.4 1.0 O1B A:ADP701 4.6 68.9 1.0 CG A:GLU348 4.6 43.6 1.0 O1A A:ADP701 4.6 55.4 1.0 PA A:ADP701 4.7 43.8 1.0 O3A A:ADP701 4.8 53.8 1.0 NZ A:LYS230 4.8 56.4 1.0 CB A:LYS230 4.9 44.8 1.0 N A:THR231 4.9 57.6 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Dead-Box Rna Helicase DDX3X in Complex with Adp at Pre-Unwound State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Dead-Box Rna Helicase DDX3X in Complex with Adp at Pre-Unwound State within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg102 b:89.9 occ:1.00 O D:HOH203 1.9 75.1 1.0 O C:HOH205 2.0 78.5 1.0 O C:HOH203 2.0 76.2 1.0 O C:HOH212 2.0 70.1 1.0 O A:HOH810 2.0 62.8 1.0 O A:HOH856 2.1 59.0 1.0 O A:ASN551 3.9 58.9 1.0 OP2 C:C11 4.2 49.8 1.0 OP1 C:U10 4.2 60.7 1.0 OP1 D:U10 4.3 61.7 1.0 OP1 C:C11 4.3 63.0 1.0 O A:HOH835 4.6 52.2 1.0 P C:C11 4.7 50.1 1.0 OD2 A:ASP555 4.8 56.2 1.0

H.Song, X.Ji. Crystal Structure of Dead-Box Rna Helicase DDX3X in Complex with Adp at Pre-Unwound State To Be Published.