Atomistry » Magnesium » PDB 8tef-8tlk » 8tkk
Atomistry »
  Magnesium »
    PDB 8tef-8tlk »
      8tkk »

Magnesium in PDB 8tkk: Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State (pdb code 8tkk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 10 binding sites of Magnesium where determined in the Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State, PDB code: 8tkk:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 10 in 8tkk

Go back to Magnesium Binding Sites List in 8tkk
Magnesium binding site 1 out of 10 in the Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:113.9
occ:1.00
 O4 A:U56 4.0 156.4 1.0
N7 A:G55 4.1 153.2 1.0
O2' A:A53 4.2 155.8 1.0
OP2 A:G55 4.3 153.2 1.0
OP2 A:A67 4.4 160.3 1.0
O6 A:G55 4.6 153.2 1.0
O3' A:A53 4.7 155.8 1.0
C5 A:G55 4.8 153.2 1.0
C4 A:U56 4.8 156.4 1.0
C8 A:G55 4.9 153.2 1.0
C5 A:U56 4.9 156.4 1.0

Magnesium binding site 2 out of 10 in 8tkk

Go back to Magnesium Binding Sites List in 8tkk
Magnesium binding site 2 out of 10 in the Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg203

b:111.8
occ:1.00
 O6 A:G75 4.1 164.6 1.0
N7 A:G75 4.1 164.6 1.0
O6 A:G76 4.4 167.7 1.0
C6 A:G75 4.6 164.6 1.0
C5 A:G75 4.6 164.6 1.0
N7 A:G76 4.9 167.7 1.0
C8 A:G75 5.0 164.6 1.0

Magnesium binding site 3 out of 10 in 8tkk

Go back to Magnesium Binding Sites List in 8tkk
Magnesium binding site 3 out of 10 in the Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg204

b:110.3
occ:1.00
 MG A:MG205 3.9 85.0 1.0
O6 A:G11 4.1 172.1 1.0
N7 A:G11 4.2 172.1 1.0
O6 A:G12 4.7 160.0 1.0
C6 A:G11 4.7 172.1 1.0
N7 A:G12 4.8 160.0 1.0
C5' A:A35 4.8 147.6 1.0
C5 A:G11 4.8 172.1 1.0

Magnesium binding site 4 out of 10 in 8tkk

Go back to Magnesium Binding Sites List in 8tkk
Magnesium binding site 4 out of 10 in the Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg205

b:85.0
occ:1.00
 MG A:MG204 3.9 110.3 1.0
OP2 A:A35 4.2 147.6 1.0

Magnesium binding site 5 out of 10 in 8tkk

Go back to Magnesium Binding Sites List in 8tkk
Magnesium binding site 5 out of 10 in the Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg206

b:104.8
occ:1.00
 N7 A:A34 3.3 139.1 1.0
N6 A:A34 4.1 139.1 1.0
C8 A:A34 4.2 139.1 1.0
C5 A:A34 4.2 139.1 1.0
OP2 A:A34 4.4 139.1 1.0
C6 A:A34 4.6 139.1 1.0
N7 A:A14 4.9 144.1 1.0
N6 A:A14 4.9 144.1 1.0

Magnesium binding site 6 out of 10 in 8tkk

Go back to Magnesium Binding Sites List in 8tkk
Magnesium binding site 6 out of 10 in the Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg207

b:94.9
occ:1.00
 N7 A:G106 4.3 164.4 1.0
OP2 A:G106 4.8 164.4 1.0
N7 A:G107 4.9 167.7 1.0
OP2 A:G39 5.0 150.6 1.0
O6 A:G106 5.0 164.4 1.0

Magnesium binding site 7 out of 10 in 8tkk

Go back to Magnesium Binding Sites List in 8tkk
Magnesium binding site 7 out of 10 in the Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg208

b:30.0
occ:1.00
 O6 A:G27 4.5 162.9 1.0
N4 A:C22 4.7 161.3 1.0
N6 A:A20 4.9 166.4 1.0

Magnesium binding site 8 out of 10 in 8tkk

Go back to Magnesium Binding Sites List in 8tkk
Magnesium binding site 8 out of 10 in the Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg209

b:117.5
occ:1.00
 N2 A:G21 3.4 161.4 1.0
N3 A:G21 3.9 161.4 1.0
C2 A:G21 4.1 161.4 1.0
O2' A:G21 4.6 161.4 1.0
O4' A:C22 4.9 161.3 1.0
O2 A:U105 4.9 157.4 1.0

Magnesium binding site 9 out of 10 in 8tkk

Go back to Magnesium Binding Sites List in 8tkk
Magnesium binding site 9 out of 10 in the Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg210

b:148.7
occ:1.00
 OP1 A:A53 2.0 155.8 1.0
OP2 A:G54 2.7 154.4 1.0
OP2 A:A90 3.1 160.3 1.0
P A:A53 3.3 155.8 1.0
OP2 A:A53 3.8 155.8 1.0
P A:G54 3.9 154.4 1.0
O5' A:A53 3.9 155.8 1.0
P A:A90 4.0 160.3 1.0
OP1 A:A90 4.1 160.3 1.0
OP1 A:A91 4.2 162.9 1.0
OP1 A:G54 4.4 154.4 1.0
O3' A:G52 4.5 155.1 1.0
O5' A:A90 4.6 160.3 1.0
O5' A:G54 4.6 154.4 1.0
C5' A:A53 4.7 155.8 1.0
C5' A:G54 5.0 154.4 1.0

Magnesium binding site 10 out of 10 in 8tkk

Go back to Magnesium Binding Sites List in 8tkk
Magnesium binding site 10 out of 10 in the Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of Rna Device 43 Truncation Mutant 3 (U100C), Apo State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg211

b:109.5
occ:1.00
 OP2 A:G57 4.3 162.5 1.0
OP1 A:C65 4.5 166.9 1.0
O6 A:G60 4.8 184.3 1.0

Reference:

J.R.Stagno, J.C.Deme, Y.-T.Lee, Y.-X.Wang, S.M.Lea. Cryo-Em Structure of Rna Device 43 Truncation Mutant (U100C), Apo State To Be Published.
Page generated: Tue Feb 25 10:48:39 2025

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy