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Magnesium in PDB 8za3: Lbadh Mutant A144F with Nadp

Protein crystallography data

The structure of Lbadh Mutant A144F with Nadp, PDB code: 8za3 was solved by W.H.Xu, Y.X.Cen, Q.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.67 / 1.56
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 55.9, 82.36, 112.64, 90, 90, 90
R / Rfree (%) 16.3 / 18.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Lbadh Mutant A144F with Nadp (pdb code 8za3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Lbadh Mutant A144F with Nadp, PDB code: 8za3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8za3

Go back to Magnesium Binding Sites List in 8za3
Magnesium binding site 1 out of 2 in the Lbadh Mutant A144F with Nadp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lbadh Mutant A144F with Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:14.1
occ:0.50
O A:HOH537 2.0 15.7 0.5
O A:HOH474 2.1 15.9 1.0
O A:GLN251 2.1 16.0 1.0
O A:HOH567 2.2 15.4 0.6
C A:GLN251 3.1 14.4 1.0
OXT A:GLN251 3.4 14.6 1.0
O A:HOH561 4.2 21.8 1.0
O A:TYR248 4.3 14.7 1.0
O A:HOH421 4.3 23.3 1.0
CA A:GLN251 4.5 13.3 1.0
CG1 A:VAL147 4.6 13.0 1.0
O A:THR249 4.6 18.1 1.0
N A:GLN251 4.7 14.6 1.0
CG A:GLN251 4.9 15.0 1.0
O A:HOH442 4.9 16.8 1.0
CA A:THR249 4.9 14.3 1.0
C A:THR249 5.0 14.2 1.0

Magnesium binding site 2 out of 2 in 8za3

Go back to Magnesium Binding Sites List in 8za3
Magnesium binding site 2 out of 2 in the Lbadh Mutant A144F with Nadp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Lbadh Mutant A144F with Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg304

b:35.4
occ:1.00
O2N A:NAP301 1.8 40.3 0.8
O A:HOH517 2.1 31.7 1.0
O1X A:NAP301 2.2 24.8 0.8
O A:HOH524 2.3 34.9 1.0
O2A A:NAP301 2.5 41.1 0.8
PN A:NAP301 3.2 44.7 0.8
P2B A:NAP301 3.5 21.5 0.8
PA A:NAP301 3.7 40.6 0.8
O3 A:NAP301 3.7 41.5 0.8
NH2 A:ARG38 3.8 31.9 1.0
O2X A:NAP301 4.0 23.1 0.8
C2B A:NAP301 4.1 20.9 0.8
O1N A:NAP301 4.2 44.0 0.8
O2B A:NAP301 4.2 20.2 0.8
O5D A:NAP301 4.2 47.2 0.8
O A:HOH557 4.2 45.7 1.0
ND1 A:HIS39 4.3 27.3 1.0
CE1 A:HIS39 4.3 27.5 1.0
CD1 A:LEU16 4.4 33.5 1.0
O5B A:NAP301 4.5 31.8 0.8
O3X A:NAP301 4.7 19.9 0.8
C3B A:NAP301 4.8 21.6 0.8
O1A A:NAP301 4.9 42.6 0.8

Reference:

W.H.Xu, Y.X.Cen, Q.Wu. Lbadh Mutant A144F with Nadp To Be Published.
Page generated: Fri Aug 15 22:12:19 2025

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