Magnesium in PDB 8zae: Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp

Protein crystallography data

The structure of Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp, PDB code: 8zae was solved by S.Y.Li, H.Li, Y.Yang, J.-W.Huang, C.-C.Chen, R.-T.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.03 / 2.28
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.765, 89.475, 142.712, 90, 90, 90
R / Rfree (%) 17.7 / 25

Other elements in 8zae:

The structure of Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp (pdb code 8zae). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp, PDB code: 8zae:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8zae

Go back to Magnesium Binding Sites List in 8zae
Magnesium binding site 1 out of 2 in the Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg503

b:48.1
occ:1.00
O1A A:FPS501 2.1 44.2 1.0
O1B A:FPS501 2.2 56.0 1.0
O A:HOH658 2.3 34.3 1.0
OE2 A:GLU126 2.6 62.5 1.0
PA A:FPS501 3.2 46.9 1.0
PB A:FPS501 3.3 47.5 1.0
O3A A:FPS501 3.4 43.6 1.0
CD A:GLU126 3.5 55.5 1.0
OE1 A:GLU126 3.7 54.7 1.0
OE2 A:GLU257 3.8 44.9 1.0
O A:HOH648 3.9 26.3 1.0
O2A A:FPS501 3.9 38.3 1.0
OE2 A:GLU255 4.1 65.1 1.0
O3B A:FPS501 4.2 49.2 1.0
NH2 A:ARG314 4.3 56.8 1.0
NZ A:LYS251 4.4 54.0 1.0
OE1 A:GLU255 4.4 71.0 1.0
O A:HOH601 4.4 37.0 1.0
O2B A:FPS501 4.4 52.6 1.0
CD A:GLU255 4.7 66.8 1.0
CD A:GLU257 4.8 39.5 1.0
S1 A:FPS501 4.9 52.9 1.0
CG A:GLU126 4.9 51.6 1.0

Magnesium binding site 2 out of 2 in 8zae

Go back to Magnesium Binding Sites List in 8zae
Magnesium binding site 2 out of 2 in the Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg503

b:60.0
occ:1.00
O3B B:FPS501 2.2 74.6 1.0
O1A B:FPS501 2.3 67.8 1.0
OE1 B:GLU126 2.8 77.1 1.0
OE2 B:GLU255 3.1 85.1 1.0
PB B:FPS501 3.4 68.6 1.0
PA B:FPS501 3.5 70.5 1.0
CD B:GLU126 3.6 76.4 1.0
NH2 B:ARG314 3.6 57.9 1.0
OE2 B:GLU126 3.7 75.0 1.0
O3A B:FPS501 3.7 76.1 1.0
OE2 B:GLU257 3.9 81.4 1.0
O2B B:FPS501 4.0 56.2 1.0
CD B:GLU255 4.1 84.4 1.0
OE1 B:GLU255 4.2 79.3 1.0
O2A B:FPS501 4.4 73.8 1.0
O B:HOH616 4.4 46.9 1.0
O1B B:FPS501 4.6 63.9 1.0
CD B:GLU257 4.8 69.0 1.0
CE B:LYS251 4.8 64.3 1.0
CZ B:ARG314 4.9 51.2 1.0
CG B:GLU126 4.9 72.9 1.0
S1 B:FPS501 5.0 63.4 1.0

Reference:

S.Y.Li, H.Li, Y.Yang, J.-W.Huang, C.-C.Chen, R.-T.Guo. Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 To Be Published.
Page generated: Sun Dec 15 11:20:48 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy