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Magnesium in PDB 8zae: Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp

Protein crystallography data

The structure of Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp, PDB code: 8zae was solved by S.Y.Li, H.Li, Y.Yang, J.-W.Huang, C.-C.Chen, R.-T.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.03 / 2.28
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.765, 89.475, 142.712, 90, 90, 90
R / Rfree (%) 17.7 / 25

Other elements in 8zae:

The structure of Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp (pdb code 8zae). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp, PDB code: 8zae:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8zae

Go back to Magnesium Binding Sites List in 8zae
Magnesium binding site 1 out of 2 in the Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg503

b:48.1
occ:1.00
O1A A:FPS501 2.1 44.2 1.0
O1B A:FPS501 2.2 56.0 1.0
O A:HOH658 2.3 34.3 1.0
OE2 A:GLU126 2.6 62.5 1.0
PA A:FPS501 3.2 46.9 1.0
PB A:FPS501 3.3 47.5 1.0
O3A A:FPS501 3.4 43.6 1.0
CD A:GLU126 3.5 55.5 1.0
OE1 A:GLU126 3.7 54.7 1.0
OE2 A:GLU257 3.8 44.9 1.0
O A:HOH648 3.9 26.3 1.0
O2A A:FPS501 3.9 38.3 1.0
OE2 A:GLU255 4.1 65.1 1.0
O3B A:FPS501 4.2 49.2 1.0
NH2 A:ARG314 4.3 56.8 1.0
NZ A:LYS251 4.4 54.0 1.0
OE1 A:GLU255 4.4 71.0 1.0
O A:HOH601 4.4 37.0 1.0
O2B A:FPS501 4.4 52.6 1.0
CD A:GLU255 4.7 66.8 1.0
CD A:GLU257 4.8 39.5 1.0
S1 A:FPS501 4.9 52.9 1.0
CG A:GLU126 4.9 51.6 1.0

Magnesium binding site 2 out of 2 in 8zae

Go back to Magnesium Binding Sites List in 8zae
Magnesium binding site 2 out of 2 in the Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 in Complex with Fspp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg503

b:60.0
occ:1.00
O3B B:FPS501 2.2 74.6 1.0
O1A B:FPS501 2.3 67.8 1.0
OE1 B:GLU126 2.8 77.1 1.0
OE2 B:GLU255 3.1 85.1 1.0
PB B:FPS501 3.4 68.6 1.0
PA B:FPS501 3.5 70.5 1.0
CD B:GLU126 3.6 76.4 1.0
NH2 B:ARG314 3.6 57.9 1.0
OE2 B:GLU126 3.7 75.0 1.0
O3A B:FPS501 3.7 76.1 1.0
OE2 B:GLU257 3.9 81.4 1.0
O2B B:FPS501 4.0 56.2 1.0
CD B:GLU255 4.1 84.4 1.0
OE1 B:GLU255 4.2 79.3 1.0
O2A B:FPS501 4.4 73.8 1.0
O B:HOH616 4.4 46.9 1.0
O1B B:FPS501 4.6 63.9 1.0
CD B:GLU257 4.8 69.0 1.0
CE B:LYS251 4.8 64.3 1.0
CZ B:ARG314 4.9 51.2 1.0
CG B:GLU126 4.9 72.9 1.0
S1 B:FPS501 5.0 63.4 1.0

Reference:

S.Y.Li, H.Li, Y.Yang, J.-W.Huang, C.-C.Chen, R.-T.Guo. Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 To Be Published.
Page generated: Sun Dec 15 11:20:48 2024

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