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Magnesium in PDB 8zi3: Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 4

Enzymatic activity of Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 4

All present enzymatic activity of Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 4:
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 4 (pdb code 8zi3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 4, PDB code: 8zi3:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 8zi3

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Magnesium binding site 1 out of 5 in the Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:80.5
occ:1.00
OG1 B:THR177 2.2 88.5 1.0
O2B B:ATP601 2.2 100.4 1.0
O1G B:ATP601 2.4 107.5 1.0
PG B:ATP601 3.4 101.2 1.0
CB B:THR177 3.4 77.4 1.0
PB B:ATP601 3.5 90.1 1.0
O2G B:ATP601 3.5 88.3 1.0
O3B B:ATP601 3.6 92.0 1.0
O1A B:ATP601 3.7 100.5 1.0
CG2 B:THR177 4.2 75.2 1.0
NE2 B:GLN201 4.3 96.5 1.0
OD1 B:ASP262 4.4 100.6 1.0
N B:THR177 4.4 72.8 1.0
O1B B:ATP601 4.5 92.0 1.0
O3A B:ATP601 4.5 86.6 1.0
CA B:THR177 4.5 72.0 1.0
PA B:ATP601 4.6 94.5 1.0
O3G B:ATP601 4.8 94.7 1.0

Magnesium binding site 2 out of 5 in 8zi3

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Magnesium binding site 2 out of 5 in the Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 4 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:87.5
occ:1.00
O2B C:ATP602 1.8 94.6 1.0
OG1 C:THR177 2.2 83.2 1.0
O2G C:ATP602 2.3 98.8 1.0
O3G C:ATP602 3.0 97.8 1.0
PG C:ATP602 3.1 109.8 1.0
PB C:ATP602 3.1 88.4 1.0
CB C:THR177 3.2 66.6 1.0
O1A C:ATP602 3.4 98.1 1.0
O3B C:ATP602 3.4 94.4 1.0
CG2 C:THR177 4.1 65.8 1.0
O3A C:ATP602 4.2 89.4 1.0
O1B C:ATP602 4.2 90.3 1.0
PA C:ATP602 4.4 99.0 1.0
N C:THR177 4.4 70.8 1.0
CA C:THR177 4.4 63.4 1.0
O1G C:ATP602 4.5 96.5 1.0
OD1 C:ASP262 4.6 89.0 1.0
OD2 C:ASP262 4.9 98.7 1.0

Magnesium binding site 3 out of 5 in 8zi3

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Magnesium binding site 3 out of 5 in the Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 4 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg502

b:109.9
occ:1.00
O3B D:ADP501 2.2 117.1 1.0
O2B D:ADP501 2.5 109.5 1.0
PB D:ADP501 2.5 118.9 1.0
NZ D:LYS154 2.9 88.7 1.0
O1B D:ADP501 3.1 111.7 1.0
CE D:LYS154 3.5 89.6 1.0
CB D:LYS154 4.0 83.9 1.0
O3A D:ADP501 4.0 106.9 1.0
O D:GLY149 4.1 109.6 1.0
OG1 D:THR155 4.2 107.8 1.0
N D:GLY151 4.3 102.3 1.0
CG D:LYS154 4.3 91.3 1.0
NH1 C:ARG377 4.5 109.9 1.0
CD D:LYS154 4.6 87.7 1.0
N D:LYS154 4.7 90.5 1.0
N D:THR155 4.8 103.8 1.0
CA D:ALA150 4.8 103.5 1.0
NH2 C:ARG377 4.8 111.0 1.0
CZ C:ARG377 4.9 113.6 1.0
CA D:LYS154 4.9 84.3 1.0

Magnesium binding site 4 out of 5 in 8zi3

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Magnesium binding site 4 out of 5 in the Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 4 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg501

b:134.3
occ:1.00
OG1 E:THR155 2.6 93.9 1.0
O1 E:PO4503 2.9 30.0 1.0
OE1 E:GLU180 3.0 115.3 1.0
O2 E:PO4503 3.1 30.0 1.0
O3B E:ADP502 3.2 20.0 1.0
P E:PO4503 3.4 30.0 1.0
CD E:GLU180 3.4 113.9 1.0
OE2 E:GLU180 3.5 108.3 1.0
O4 E:PO4503 3.6 30.0 1.0
CB E:THR155 4.0 79.9 1.0
ND2 E:ASN248 4.1 96.6 1.0
NH2 E:ARG181 4.2 103.8 1.0
PB E:ADP502 4.4 20.0 1.0
N E:THR155 4.4 82.5 1.0
CE E:LYS154 4.4 72.2 1.0
CG E:GLU180 4.5 106.4 1.0
O2B E:ADP502 4.6 20.0 1.0
CA E:THR155 4.6 75.4 1.0
CB E:LYS154 4.7 78.4 1.0
NZ E:LYS154 4.8 69.1 1.0
CG2 E:THR155 4.8 87.8 1.0
O2A E:ADP502 4.8 20.0 1.0
O3 E:PO4503 4.8 30.0 1.0
OD1 E:ASP247 5.0 108.9 1.0

Magnesium binding site 5 out of 5 in 8zi3

Go back to Magnesium Binding Sites List in 8zi3
Magnesium binding site 5 out of 5 in the Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:77.7
occ:1.00
O2B A:ATP602 2.0 109.5 1.0
O2G A:ATP602 2.1 109.6 1.0
OG1 A:THR177 2.1 99.0 1.0
PG A:ATP602 3.2 109.9 1.0
PB A:ATP602 3.3 103.0 1.0
O3B A:ATP602 3.4 98.5 1.0
CB A:THR177 3.4 84.5 1.0
O1G A:ATP602 3.9 109.9 1.0
OD1 A:ASP262 4.0 98.0 1.0
NE2 A:GLN201 4.1 93.8 1.0
O1B A:ATP602 4.1 101.4 1.0
O1A A:ATP602 4.2 107.9 1.0
CG2 A:THR177 4.2 79.5 1.0
N A:THR177 4.3 77.9 1.0
O3A A:ATP602 4.4 110.0 1.0
O3G A:ATP602 4.5 107.9 1.0
CA A:THR177 4.5 76.4 1.0
PA A:ATP602 4.9 112.5 1.0
CG A:ASP262 5.0 95.9 1.0

Reference:

K.C.M.Le, C.F.Wong, V.Muller, G.Gruber. Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F 1 -Atpase Rotary Subunits Gamma and Epsilon , Unveiling Novel Compound Targets. Faseb J. V. 38 70131 2024.
ISSN: ESSN 1530-6860
PubMed: 39467208
DOI: 10.1096/FJ.202401629R
Page generated: Fri Aug 15 22:24:37 2025

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