Magnesium in PDB 8zj3: Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 4-Hydroxybenzoate.

Enzymatic activity of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 4-Hydroxybenzoate.

All present enzymatic activity of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 4-Hydroxybenzoate.:
1.1.1.262;

Protein crystallography data

The structure of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 4-Hydroxybenzoate., PDB code: 8zj3 was solved by K.A.Kumar, D.Pahwa, P.Kumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.90
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 86.831, 94.332, 168.433, 90, 90, 90
R / Rfree (%) 23.8 / 27.9

Other elements in 8zj3:

The structure of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 4-Hydroxybenzoate. also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 4-Hydroxybenzoate. (pdb code 8zj3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 4-Hydroxybenzoate., PDB code: 8zj3:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 8zj3

Go back to Magnesium Binding Sites List in 8zj3
Magnesium binding site 1 out of 3 in the Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 4-Hydroxybenzoate.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 4-Hydroxybenzoate. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:19.1
occ:1.00
 H A:SER215 2.1 0.5 1.0
HG A:SER205 2.7 30.0 0.0
O A:GLY211 2.8 0.5 1.0
HA A:LEU212 2.8 0.5 1.0
OG A:SER215 2.8 0.5 1.0
N A:SER215 2.9 0.5 1.0
H A:ASP214 2.9 0.5 1.0
HG A:SER215 3.1 30.0 0.0
O A:GLY207 3.1 0.5 1.0
HB2 A:ASP214 3.1 0.5 1.0
HB3 A:SER205 3.2 0.5 1.0
HA A:GLN208 3.2 0.5 1.0
HB3 A:SER215 3.2 0.5 1.0
HB2 A:SER205 3.2 0.5 1.0
C A:LEU212 3.2 0.5 1.0
O A:LEU212 3.3 0.5 1.0
HG2 A:GLN208 3.3 0.5 1.0
CA A:LEU212 3.4 0.5 1.0
N A:ASP214 3.4 0.5 1.0
CB A:SER215 3.4 0.5 1.0
CB A:SER205 3.5 0.5 1.0
OG A:SER205 3.5 0.5 1.0
C A:GLY211 3.7 0.5 1.0
CA A:SER215 3.7 0.5 1.0
HG3 A:GLN208 3.7 0.5 1.0
C A:ASP214 3.8 0.5 1.0
CA A:ASP214 3.8 0.5 1.0
N A:GLU213 3.8 0.5 1.0
CB A:ASP214 3.9 0.5 1.0
N A:LEU212 3.9 0.5 1.0
CG A:GLN208 3.9 0.5 1.0
H A:GLU213 4.0 0.5 1.0
CA A:GLN208 4.1 0.5 1.0
C A:GLY207 4.2 0.5 1.0
C A:GLU213 4.2 0.5 1.0
HA A:SER215 4.2 0.5 1.0
HB3 A:ASP214 4.3 0.5 1.0
HB2 A:SER215 4.3 0.5 1.0
H A:GLN216 4.5 0.5 1.0
CB A:GLN208 4.5 0.5 1.0
HD22 A:ASN201 4.6 0.5 1.0
HD21 A:LEU212 4.6 0.5 1.0
N A:GLN208 4.6 0.5 1.0
CA A:GLU213 4.7 0.5 1.0
HE22 A:GLN208 4.7 0.5 1.0
HB3 A:GLN208 4.8 0.5 1.0
H A:LEU212 4.8 0.5 1.0
CB A:LEU212 4.8 0.5 1.0
HA A:ASP214 4.8 0.5 1.0
HB3 A:LEU212 4.9 0.5 1.0
O A:ASP214 4.9 0.5 1.0
C A:SER215 4.9 0.5 1.0
CA A:SER205 5.0 0.5 1.0

Magnesium binding site 2 out of 3 in 8zj3

Go back to Magnesium Binding Sites List in 8zj3
Magnesium binding site 2 out of 3 in the Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 4-Hydroxybenzoate.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 4-Hydroxybenzoate. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg404

b:21.7
occ:1.00
 OD1 A:ASP256 2.4 0.5 1.0
HE1 A:HIS255 2.4 0.5 1.0
HD1 A:HIS255 3.0 30.0 0.0
CE1 A:HIS255 3.1 0.5 1.0
ND1 A:HIS255 3.3 0.5 1.0
CG A:ASP256 3.4 0.5 1.0
OD2 A:ASP256 3.8 0.5 1.0
HA A:ASP256 4.2 0.5 1.0
NE2 A:HIS255 4.3 0.5 1.0
CB A:ASP256 4.6 0.5 1.0
CG A:HIS255 4.6 0.5 1.0
HB2 A:HIS259 4.6 0.5 1.0
HE2 A:HIS255 4.7 30.0 0.0
HB3 A:HIS259 4.8 0.5 1.0
CA A:ASP256 4.9 0.5 1.0
HB3 A:ASP256 4.9 0.5 1.0

Magnesium binding site 3 out of 3 in 8zj3

Go back to Magnesium Binding Sites List in 8zj3
Magnesium binding site 3 out of 3 in the Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 4-Hydroxybenzoate.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 4-Hydroxybenzoate. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:22.2
occ:1.00
 H B:ALA238 2.2 0.5 1.0
OD2 C:ASP256 2.3 0.5 1.0
HA2 B:GLY237 2.8 0.5 1.0
O B:HOH516 3.0 17.4 1.0
CG C:ASP256 3.1 0.5 1.0
N B:ALA238 3.1 0.5 1.0
OD1 C:ASP256 3.3 0.5 1.0
HE22 B:GLN257 3.3 0.5 1.0
HA B:PRO202 3.4 0.5 1.0
HB2 B:ALA238 3.5 0.5 1.0
HB1 B:ALA238 3.5 0.5 1.0
HE21 B:GLN257 3.5 0.5 1.0
O B:ASN201 3.5 0.5 1.0
O B:GLY199 3.6 0.5 1.0
H B:HIS203 3.6 0.5 1.0
CA B:GLY237 3.6 0.5 1.0
H B:ALA204 3.7 0.5 1.0
NE2 B:GLN257 3.8 0.5 1.0
H B:GLY199 3.8 0.5 1.0
CB B:ALA238 3.8 0.5 1.0
C B:GLY237 3.9 0.5 1.0
CA B:ALA238 4.1 0.5 1.0
HA3 B:GLY199 4.1 0.5 1.0
HA3 B:GLY237 4.1 0.5 1.0
CA B:PRO202 4.2 0.5 1.0
C B:ASN201 4.2 0.5 1.0
N B:HIS203 4.2 0.5 1.0
C B:GLY199 4.3 0.5 1.0
HB3 B:PHE198 4.3 0.5 1.0
H B:ASP239 4.3 0.5 1.0
N B:GLY199 4.3 0.5 1.0
O B:MET236 4.3 0.5 1.0
CA B:GLY199 4.4 0.5 1.0
N B:PRO202 4.4 0.5 1.0
CB C:ASP256 4.5 0.5 1.0
HB3 C:ASP256 4.6 0.5 1.0
N B:ALA204 4.6 0.5 1.0
C B:PRO202 4.6 0.5 1.0
N B:GLY237 4.6 0.5 1.0
HA B:ALA238 4.7 0.5 1.0
HB3 B:ALA238 4.7 0.5 1.0
HA B:ALA204 4.8 0.5 1.0
HB2 C:ASP256 4.9 0.5 1.0
C B:MET236 4.9 0.5 1.0
OD1 B:ASP239 4.9 0.5 1.0
HD1 C:HIS255 5.0 30.0 0.0

Reference:

K.A.Kumar, D.Pahwa. Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 4-Hydroxybenzoate. To Be Published.
Page generated: Sat Oct 5 08:41:43 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy