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Magnesium in PDB 9dxc: Model of Tubulin Dimers Used For Determining the Dimer Rise in A Taxol-Stabilized Microtubule-Hurp Complex

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Model of Tubulin Dimers Used For Determining the Dimer Rise in A Taxol-Stabilized Microtubule-Hurp Complex (pdb code 9dxc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Model of Tubulin Dimers Used For Determining the Dimer Rise in A Taxol-Stabilized Microtubule-Hurp Complex, PDB code: 9dxc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 9dxc

Go back to Magnesium Binding Sites List in 9dxc
Magnesium binding site 1 out of 2 in the Model of Tubulin Dimers Used For Determining the Dimer Rise in A Taxol-Stabilized Microtubule-Hurp Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Model of Tubulin Dimers Used For Determining the Dimer Rise in A Taxol-Stabilized Microtubule-Hurp Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:49.7
occ:1.00
O1G A:GTP501 2.0 58.3 1.0
OE2 A:GLU71 2.6 63.4 1.0
O1B A:GTP501 2.9 52.8 1.0
PG A:GTP501 3.5 53.4 1.0
CD A:GLU71 3.6 60.0 1.0
NZ B:LYS252 3.7 40.0 1.0
PB A:GTP501 3.9 49.4 1.0
O3A A:GTP501 4.0 47.7 1.0
OE1 A:GLN11 4.0 49.6 1.0
O3B A:GTP501 4.1 51.8 1.0
CB A:GLN11 4.3 23.5 1.0
OD2 A:ASP69 4.3 51.5 1.0
OD1 A:ASP69 4.3 57.4 1.0
O3G A:GTP501 4.3 47.0 1.0
CG A:GLU71 4.3 58.4 1.0
O2G A:GTP501 4.4 50.5 1.0
OE1 A:GLU71 4.4 58.7 1.0
N A:GLN11 4.7 37.2 1.0
CG A:ASP69 4.7 50.6 1.0
CB A:ASP98 4.8 54.7 1.0
CD A:GLN11 4.9 42.0 1.0
CG2 A:THR145 4.9 41.8 1.0

Magnesium binding site 2 out of 2 in 9dxc

Go back to Magnesium Binding Sites List in 9dxc
Magnesium binding site 2 out of 2 in the Model of Tubulin Dimers Used For Determining the Dimer Rise in A Taxol-Stabilized Microtubule-Hurp Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Model of Tubulin Dimers Used For Determining the Dimer Rise in A Taxol-Stabilized Microtubule-Hurp Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg502

b:41.3
occ:1.00
O1G C:GTP501 2.0 44.1 1.0
OE2 C:GLU71 2.6 59.9 1.0
O1B C:GTP501 2.8 49.5 1.0
PG C:GTP501 3.4 46.9 1.0
CD C:GLU71 3.6 57.1 1.0
NZ D:LYS252 3.7 45.5 1.0
PB C:GTP501 3.8 43.8 1.0
O3A C:GTP501 4.0 46.5 1.0
O3B C:GTP501 4.1 48.3 1.0
OD2 C:ASP69 4.2 51.5 1.0
OD1 C:ASP69 4.2 47.4 1.0
OE1 C:GLN11 4.2 42.6 1.0
O2G C:GTP501 4.2 51.2 1.0
CG C:GLU71 4.3 55.6 1.0
CB C:GLN11 4.3 25.8 1.0
O3G C:GTP501 4.3 49.6 1.0
OE1 C:GLU71 4.5 58.9 1.0
N C:GLN11 4.6 31.2 1.0
CG C:ASP69 4.6 46.3 1.0
CG2 C:THR145 4.7 35.5 1.0
CB C:ASP98 4.8 54.4 1.0
OD1 C:ASP98 4.8 69.1 1.0
CE D:LYS252 4.9 42.7 1.0

Reference:

J.M.Perez-Bertoldi, Y.Zhao, A.Thawani, A.Yildiz, E.Nogales. Hurp Regulates KIF18A Recruitment and Activity to Synergistically Control Microtubule Dynamics. Nat Commun V. 15 9687 2024.
ISSN: ESSN 2041-1723
PubMed: 39516196
DOI: 10.1038/S41467-024-53691-7
Page generated: Sat Aug 16 00:49:08 2025

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