Magnesium in PDB 9dxe: Model of Tubulin Dimers Used For Determining the Dimer Rise in A Taxol-Stabilized Microtubule

The binding sites of Magnesium atom in the Model of Tubulin Dimers Used For Determining the Dimer Rise in A Taxol-Stabilized Microtubule (pdb code 9dxe). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Model of Tubulin Dimers Used For Determining the Dimer Rise in A Taxol-Stabilized Microtubule, PDB code: 9dxe:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Model of Tubulin Dimers Used For Determining the Dimer Rise in A Taxol-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Model of Tubulin Dimers Used For Determining the Dimer Rise in A Taxol-Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:68.3 occ:1.00 O1G A:GTP501 2.1 72.4 1.0 O1B A:GTP501 2.7 77.4 1.0 OE2 A:GLU71 2.7 83.6 1.0 NZ B:LYS252 3.2 75.3 1.0 OE1 A:GLN11 3.6 66.8 1.0 PG A:GTP501 3.6 94.1 1.0 PB A:GTP501 3.6 83.9 1.0 O3A A:GTP501 3.6 77.8 1.0 CD A:GLU71 3.8 84.2 1.0 CB A:GLN11 4.0 58.3 1.0 O3B A:GTP501 4.0 82.3 1.0 O2G A:GTP501 4.4 86.6 1.0 O3G A:GTP501 4.4 83.0 1.0 CD A:GLN11 4.5 70.1 1.0 O1A A:GTP501 4.6 80.4 1.0 CG A:GLU71 4.6 83.3 1.0 OE1 A:GLU71 4.6 83.3 1.0 OD2 A:ASP69 4.6 65.7 1.0 CE B:LYS252 4.6 71.7 1.0 PA A:GTP501 4.6 81.5 1.0 N A:GLN11 4.6 62.6 1.0 OD1 A:ASP69 4.8 72.1 1.0 CG A:GLN11 4.9 62.3 1.0 CA A:GLN11 4.9 61.7 1.0 O2B A:GTP501 5.0 80.5 1.0 O B:ASN247 5.0 75.6 1.0 OD1 B:ASN247 5.0 73.3 1.0

Magnesium binding site 2 out of 2 in the Model of Tubulin Dimers Used For Determining the Dimer Rise in A Taxol-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Model of Tubulin Dimers Used For Determining the Dimer Rise in A Taxol-Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:76.6 occ:1.00 O1G C:GTP501 2.0 78.2 1.0 O1B C:GTP501 2.9 84.0 1.0 OE2 C:GLU71 2.9 89.3 1.0 O3A C:GTP501 3.3 79.8 1.0 PG C:GTP501 3.5 90.0 1.0 OD1 C:ASP98 3.5 87.4 1.0 OE1 C:GLN11 3.5 71.6 1.0 PB C:GTP501 3.6 92.4 1.0 OD2 C:ASP98 3.7 89.6 1.0 NZ D:LYS252 3.8 76.1 1.0 CG C:ASP98 3.9 89.8 1.0 CD C:GLU71 3.9 86.2 1.0 CB C:GLN11 4.0 57.5 1.0 O3B C:GTP501 4.0 82.1 1.0 O3G C:GTP501 4.2 85.0 1.0 O2G C:GTP501 4.4 86.2 1.0 PA C:GTP501 4.5 84.5 1.0 O1A C:GTP501 4.5 82.4 1.0 OD2 C:ASP69 4.5 80.6 1.0 CD C:GLN11 4.6 72.0 1.0 N C:GLN11 4.6 60.1 1.0 CG C:GLU71 4.7 82.8 1.0 OE1 C:GLU71 4.7 83.2 1.0 OD1 C:ASP69 4.8 85.2 1.0 CA C:GLN11 4.9 64.4 1.0 CG C:GLN11 4.9 62.5 1.0 O2B C:GTP501 5.0 86.4 1.0 O2A C:GTP501 5.0 92.6 1.0

J.M.Perez-Bertoldi, Y.Zhao, A.Thawani, A.Yildiz, E.Nogales. Hurp Regulates KIF18A Recruitment and Activity to Synergistically Control Microtubule Dynamics. Nat Commun V. 15 9687 2024.
ISSN: ESSN 2041-1723
PubMed: 39516196
DOI: 10.1038/S41467-024-53691-7