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Magnesium in PDB 2fkb: Crystal Structure of A Putative Enzyme (Possible Nudix Hydrolase) From Escherichia Coli K12

Protein crystallography data

The structure of Crystal Structure of A Putative Enzyme (Possible Nudix Hydrolase) From Escherichia Coli K12, PDB code: 2fkb was solved by B.Nocek, E.Evdokimova, M.Kudritska, A.Savchenko, A.Edwards, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.00
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 89.701, 134.884, 145.246, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 23.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Putative Enzyme (Possible Nudix Hydrolase) From Escherichia Coli K12 (pdb code 2fkb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Putative Enzyme (Possible Nudix Hydrolase) From Escherichia Coli K12, PDB code: 2fkb:

Magnesium binding site 1 out of 1 in 2fkb

Go back to Magnesium Binding Sites List in 2fkb
Magnesium binding site 1 out of 1 in the Crystal Structure of A Putative Enzyme (Possible Nudix Hydrolase) From Escherichia Coli K12


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Putative Enzyme (Possible Nudix Hydrolase) From Escherichia Coli K12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg910

b:49.3
occ:1.00
O A:HOH1041 2.3 39.4 1.0
O A:HOH957 2.4 38.0 1.0
O A:HOH1035 2.4 33.5 1.0
O3 A:GOL904 2.7 33.9 1.0
OE2 A:GLU88 2.7 41.4 1.0
C3 A:GOL904 3.2 43.0 1.0
CD A:GLU88 3.5 37.2 1.0
OE1 A:GLU88 3.5 40.9 1.0
NH1 A:ARG27 3.8 38.8 1.0
O A:HOH1034 4.1 64.2 1.0
N A:VAL74 4.2 28.0 1.0
NH1 A:ARG87 4.3 34.7 1.0
OE2 A:GLU10 4.4 41.6 1.0
OE1 A:GLU10 4.4 43.3 1.0
O A:VAL74 4.5 28.6 1.0
C2 A:GOL904 4.5 49.3 1.0
O2 A:GOL904 4.5 53.4 1.0
CA A:GLY73 4.5 27.9 1.0
OE1 A:GLU91 4.6 39.6 1.0
CD A:GLU10 4.7 38.5 1.0
C A:GLY73 4.7 28.6 1.0
OE1 A:GLN76 4.7 40.5 1.0
NH2 A:ARG87 4.8 32.0 1.0
CG A:GLU88 4.9 31.5 1.0

Reference:

B.Nocek, E.Evdokimova, M.Kudritska, A.Savchenko, A.Edwards, A.Joachimiak. Crystal Structure of A Putative Enzyme (Possible Nudix Hydrolase) From Escherichia Coli K12 To Be Published.
Page generated: Sun Aug 10 10:52:14 2025

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