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Magnesium in PDB 2osb: Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/)

Enzymatic activity of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/)

All present enzymatic activity of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/):
2.7.4.3;

Protein crystallography data

The structure of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/), PDB code: 2osb was solved by J.Myers, R.Counago, C.J.Wilson, G.Wu, Y.Shamoo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 34.578, 74.317, 77.418, 90.00, 100.21, 90.00
R / Rfree (%) 24.5 / 26.4

Other elements in 2osb:

The structure of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/) (pdb code 2osb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/), PDB code: 2osb:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2osb

Go back to Magnesium Binding Sites List in 2osb
Magnesium binding site 1 out of 2 in the Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1223

b:16.5
occ:1.00
O2G A:AP51218 2.5 20.1 1.0
O A:HOH1252 2.5 24.6 1.0
O2B A:AP51218 2.6 18.6 1.0
O A:HOH1377 2.6 40.4 1.0
O A:HOH1255 2.7 24.1 1.0
PG A:AP51218 3.7 20.8 1.0
PB A:AP51218 3.7 20.3 1.0
O3B A:AP51218 3.9 21.4 1.0
O1E A:AP51218 4.1 19.3 1.0
N A:GLY14 4.2 17.9 1.0
CA A:GLY14 4.2 19.1 1.0
O3G A:AP51218 4.2 21.4 1.0
O A:HOH1257 4.3 32.1 1.0
NH2 A:ARG127 4.4 16.8 1.0
NH2 A:ARG160 4.5 17.4 1.0
OD2 A:ASP84 4.5 21.3 1.0
O3A A:AP51218 4.5 19.5 1.0
OD1 A:ASP33 4.5 22.2 1.0
O2A A:AP51218 4.6 19.4 1.0
O A:HOH1309 4.6 34.9 1.0
O2E A:AP51218 4.6 15.6 1.0
OD1 A:ASP84 4.7 21.5 1.0
OG A:SER30 4.7 21.4 1.0
O1G A:AP51218 4.8 20.9 1.0
O1B A:AP51218 4.8 21.9 1.0
PE A:AP51218 4.8 19.8 1.0
PA A:AP51218 4.9 19.0 1.0
CG A:ASP84 5.0 20.7 1.0

Magnesium binding site 2 out of 2 in 2osb

Go back to Magnesium Binding Sites List in 2osb
Magnesium binding site 2 out of 2 in the Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1222

b:16.2
occ:1.00
O B:HOH1288 2.5 27.9 1.0
O2G B:AP51219 2.6 24.9 1.0
O2B B:AP51219 2.6 19.0 1.0
PG B:AP51219 3.7 24.6 1.0
PB B:AP51219 3.7 22.2 1.0
O3B B:AP51219 3.9 23.8 1.0
O1E B:AP51219 4.0 25.1 1.0
N B:GLY14 4.1 19.5 1.0
CA B:GLY14 4.2 20.9 1.0
O3G B:AP51219 4.2 26.6 1.0
NH2 B:ARG160 4.3 22.9 1.0
OD2 B:ASP84 4.4 19.1 1.0
OG B:SER30 4.4 23.1 1.0
OD1 B:ASP84 4.5 18.1 1.0
O3A B:AP51219 4.6 21.0 1.0
O2A B:AP51219 4.6 21.4 1.0
O2E B:AP51219 4.6 24.0 1.0
NH2 B:ARG36 4.6 30.5 1.0
OD1 B:ASP33 4.7 29.5 1.0
PE B:AP51219 4.7 25.7 1.0
NH2 B:ARG127 4.8 26.9 1.0
O1B B:AP51219 4.8 18.4 1.0
CG B:ASP84 4.8 22.6 1.0
O1G B:AP51219 4.8 24.6 1.0
PA B:AP51219 4.9 20.3 1.0

Reference:

R.Counago, C.J.Wilson, J.Myers, G.Wu, Y.Shamoo, P.Wittung-Stafshede. Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/) To Be Published.
Page generated: Sun Aug 10 12:31:42 2025

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