Magnesium in PDB 2xb2: Crystal Structure of the Core Mago-Y14-EIF4AIII-Barentsz- UPF3B Assembly Shows How the Ejc Is Bridged to the Nmd Machinery

The structure of Crystal Structure of the Core Mago-Y14-EIF4AIII-Barentsz- UPF3B Assembly Shows How the Ejc Is Bridged to the Nmd Machinery, PDB code: 2xb2 was solved by G.Buchwald, J.Ebert, C.Basquin, J.Sauliere, U.Jayachandran, F.Bono, H.Le Hir, E.Conti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	60 / 3.40
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	134.800, 134.800, 227.250, 90.00, 90.00, 90.00
R / Rfree (%)	22.04 / 26.04

The binding sites of Magnesium atom in the Crystal Structure of the Core Mago-Y14-EIF4AIII-Barentsz- UPF3B Assembly Shows How the Ejc Is Bridged to the Nmd Machinery (pdb code 2xb2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Core Mago-Y14-EIF4AIII-Barentsz- UPF3B Assembly Shows How the Ejc Is Bridged to the Nmd Machinery, PDB code: 2xb2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Core Mago-Y14-EIF4AIII-Barentsz- UPF3B Assembly Shows How the Ejc Is Bridged to the Nmd Machinery


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Core Mago-Y14-EIF4AIII-Barentsz- UPF3B Assembly Shows How the Ejc Is Bridged to the Nmd Machinery within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1412 b:81.8 occ:1.00 O1G A:ANP1413 2.1 36.5 1.0 OG1 A:THR89 2.3 49.0 1.0 OE2 A:GLU188 2.7 71.0 1.0 O1B A:ANP1413 2.8 30.4 1.0 OD2 A:ASP187 3.1 63.9 1.0 OD1 A:ASP187 3.4 63.9 1.0 CG A:ASP187 3.6 63.9 1.0 PG A:ANP1413 3.7 35.7 1.0 CB A:THR89 3.8 49.0 1.0 CD A:GLU188 3.9 71.0 1.0 CA A:GLY340 4.0 86.0 1.0 PB A:ANP1413 4.1 32.9 1.0 O2G A:ANP1413 4.3 39.0 1.0 N3B A:ANP1413 4.4 34.6 1.0 O A:GLY340 4.4 86.0 1.0 CG2 A:THR89 4.5 49.0 1.0 CG A:GLU188 4.5 71.0 1.0 O3G A:ANP1413 4.5 37.3 1.0 CA A:THR89 4.7 49.0 1.0 N A:THR89 4.7 49.0 1.0 CD1 A:LEU118 4.7 54.2 1.0 C A:GLY340 4.8 86.0 1.0 N A:GLY340 4.8 86.0 1.0 CD2 A:LEU118 4.9 54.2 1.0 OE1 A:GLU188 4.9 71.0 1.0 O3A A:ANP1413 5.0 33.1 1.0 O1A A:ANP1413 5.0 34.1 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Core Mago-Y14-EIF4AIII-Barentsz- UPF3B Assembly Shows How the Ejc Is Bridged to the Nmd Machinery


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Core Mago-Y14-EIF4AIII-Barentsz- UPF3B Assembly Shows How the Ejc Is Bridged to the Nmd Machinery within 5.0Å range: probe atom residue distance (Å) B Occ X:Mg1412 b:81.8 occ:1.00 OG1 X:THR89 2.1 68.4 1.0 O1G X:ANP1413 2.2 36.5 1.0 O1B X:ANP1413 2.3 30.4 1.0 OE2 X:GLU188 2.9 85.0 1.0 OD1 X:ASP187 3.3 84.1 1.0 OD2 X:ASP187 3.3 84.1 1.0 CB X:THR89 3.6 68.4 1.0 CG X:ASP187 3.7 84.1 1.0 PG X:ANP1413 3.7 35.7 1.0 PB X:ANP1413 3.8 32.9 1.0 CD X:GLU188 4.2 85.0 1.0 N3B X:ANP1413 4.2 34.6 1.0 N X:THR89 4.2 68.4 1.0 CA X:THR89 4.3 68.4 1.0 CA X:GLY340 4.4 73.0 1.0 CG2 X:THR89 4.4 68.4 1.0 O3G X:ANP1413 4.4 37.3 1.0 O2G X:ANP1413 4.5 39.0 1.0 O3A X:ANP1413 4.6 33.1 1.0 O2B X:ANP1413 4.8 30.7 1.0 O1A X:ANP1413 4.8 34.1 1.0 CG X:GLU188 4.8 85.0 1.0 CB X:LYS88 4.9 57.7 1.0 O X:GLY340 4.9 73.0 1.0 CE X:LYS88 4.9 57.7 1.0

G.Buchwald, J.Ebert, C.Basquin, J.Sauliere, U.Jayachandran, F.Bono, H.Le Hir, E.Conti. Insights Into the Recruitment of the Nmd Machinery From the Crystal Structure of A Core Ejc-UPF3B Complex. Proc.Natl.Acad.Sci.Usa V. 107 10050 2010.
ISSN: ISSN 0027-8424
PubMed: 20479275
DOI: 10.1073/PNAS.1000993107