Magnesium in PDB 3lyd: Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans

The structure of Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans, PDB code: 3lyd was solved by C.Chang, L.Volkart, J.Bearden, D.Wu, J.Eisen, C.Kerfeld, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.45
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	41.551, 70.879, 99.480, 90.00, 90.00, 90.00
R / Rfree (%)	16.4 / 19.2

The binding sites of Magnesium atom in the Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans (pdb code 3lyd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans, PDB code: 3lyd:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:23.6 occ:1.00 O A:HOH269 2.0 15.9 1.0 OE2 A:GLU86 2.1 18.7 1.0 O A:HOH361 2.1 26.1 1.0 O A:HOH349 2.2 27.0 1.0 O A:HOH180 2.2 16.9 1.0 CD A:GLU86 3.1 17.2 1.0 OE1 A:GLU86 3.4 19.6 1.0 NH2 A:ARG66 4.0 9.9 1.0 NH1 A:ARG66 4.0 10.0 1.0 O A:HOH262 4.1 23.4 1.0 O A:HOH274 4.3 8.2 1.0 CZ A:ARG66 4.4 9.7 1.0 CG A:GLU86 4.4 9.9 1.0 O A:HOH258 4.4 17.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:29.7 occ:1.00 O A:HOH227 1.9 12.7 1.0 O A:HOH253 2.1 26.9 1.0 O A:HOH424 2.1 25.9 1.0 O A:HOH382 3.0 27.7 1.0 O A:ASP90 3.6 8.8 0.5 O A:HOH199 3.7 21.1 1.0 OD1 A:ASP90 4.0 6.7 0.5 OD2 A:ASP90 4.1 6.3 0.5 O A:HOH460 4.1 29.1 1.0 CG A:ASP90 4.2 7.2 0.5 O A:VAL154 4.2 9.7 1.0 CB A:ASP90 4.3 7.6 0.5 O A:HOH231 4.4 12.0 1.0 OD1 A:ASP90 4.6 11.0 0.5 C A:ASP90 4.6 8.7 0.5 CG A:ASP90 4.7 10.6 0.5 CE2 A:PHE92 4.7 10.2 0.5 O A:ASP90 4.8 6.1 0.5 CE2 A:PHE92 4.8 8.8 0.5 CD A:PRO156 4.9 12.3 1.0

C.Chang, L.Volkart, J.Bearden, D.Wu, J.Eisen, C.Kerfeld, A.Joachimiak. Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans To Be Published.