Magnesium in PDB 6qs7: Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A

The binding sites of Magnesium atom in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A (pdb code 6qs7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A, PDB code: 6qs7:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:0.9 occ:1.00 O2G A:AGS1001 2.1 0.3 1.0 OG1 A:THR213 2.4 0.1 1.0 O1B A:AGS1001 3.3 0.3 1.0 PG A:AGS1001 3.6 0.3 1.0 CB A:THR213 3.7 0.1 1.0 O3G A:AGS1001 4.1 0.3 1.0 N A:THR213 4.2 0.1 1.0 O1A A:AGS1001 4.2 0.3 1.0 PB A:AGS1001 4.4 0.3 1.0 O3B A:AGS1001 4.5 0.3 1.0 CA A:THR213 4.5 0.1 1.0 O2A A:AGS1001 4.6 0.3 1.0 CG2 A:THR213 4.7 0.1 1.0 S1G A:AGS1001 4.7 0.3 1.0 PA A:AGS1001 4.7 0.3 1.0 O3A A:AGS1001 4.8 0.3 1.0 CB A:ASP278 4.9 97.5 1.0

Magnesium binding site 2 out of 8 in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1003 b:67.5 occ:1.00 O1B B:AGS1001 2.1 76.4 1.0 O2G B:AGS1001 2.1 76.4 1.0 OG1 B:THR213 2.3 71.4 1.0 PG B:AGS1001 3.2 76.4 1.0 PB B:AGS1001 3.3 76.4 1.0 O3G B:AGS1001 3.6 76.4 1.0 CB B:THR213 3.6 71.4 1.0 O3B B:AGS1001 3.7 76.4 1.0 NH1 A:ARG332 4.1 80.1 1.0 O2B B:AGS1001 4.2 76.4 1.0 N B:THR213 4.3 71.4 1.0 CA B:THR213 4.5 71.4 1.0 O3A B:AGS1001 4.5 76.4 1.0 CG2 B:THR213 4.5 71.4 1.0 O2A B:AGS1001 4.6 76.4 1.0 O1A B:AGS1001 4.8 76.4 1.0 CB B:ASP278 4.9 73.2 1.0 S1G B:AGS1001 4.9 76.4 1.0 PA B:AGS1001 4.9 76.4 1.0

Magnesium binding site 3 out of 8 in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1004 b:0.6 occ:1.00 OG1 B:THR612 2.1 0.1 1.0 O1B B:AGS1002 2.1 0.9 1.0 O2G B:AGS1002 2.7 0.9 1.0 OD1 B:ASP677 3.2 99.3 1.0 CB B:THR612 3.3 0.1 1.0 PB B:AGS1002 3.6 0.9 1.0 PG B:AGS1002 4.1 0.9 1.0 CG2 B:THR612 4.2 0.1 1.0 N B:THR612 4.2 0.1 1.0 CG B:ASP677 4.2 99.3 1.0 O2A B:AGS1002 4.3 0.9 1.0 CA B:THR612 4.3 0.1 1.0 O3B B:AGS1002 4.3 0.9 1.0 O3A B:AGS1002 4.3 0.9 1.0 O1A B:AGS1002 4.4 0.9 1.0 O2B B:AGS1002 4.5 0.9 1.0 OD2 B:ASP677 4.5 99.3 1.0 PA B:AGS1002 4.6 0.9 1.0 OG1 B:THR717 4.7 93.4 1.0 NH2 B:ARG815 4.8 0.3 1.0 NH2 A:ARG756 4.8 0.7 1.0

Magnesium binding site 4 out of 8 in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1003 b:57.5 occ:1.00 O1B C:AGS1001 2.0 68.3 1.0 OG1 C:THR213 2.1 65.9 1.0 O2G C:AGS1001 2.5 68.3 1.0 CB C:THR213 3.4 65.9 1.0 PB C:AGS1001 3.5 68.3 1.0 PG C:AGS1001 3.9 68.3 1.0 CG2 C:THR213 4.0 65.9 1.0 O3A C:AGS1001 4.2 68.3 1.0 O3B C:AGS1001 4.2 68.3 1.0 N C:THR213 4.4 65.9 1.0 CA C:THR213 4.5 65.9 1.0 O2B C:AGS1001 4.5 68.3 1.0 NH1 B:ARG332 4.8 61.0 1.0 O3G C:AGS1001 4.9 68.3 1.0 CB C:ASP278 4.9 78.2 1.0

Magnesium binding site 5 out of 8 in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1004 b:84.2 occ:1.00 OG1 C:THR612 2.1 82.8 1.0 O1B C:AGS1002 2.4 88.1 1.0 OD1 C:ASP677 2.4 77.8 1.0 OD2 C:ASP677 2.4 77.8 1.0 O2G C:AGS1002 2.6 88.1 1.0 CG C:ASP677 2.7 77.8 1.0 CB C:THR612 3.5 82.8 1.0 OG1 C:THR717 3.6 71.1 1.0 PB C:AGS1002 3.8 88.1 1.0 N C:THR612 4.0 82.8 1.0 PG C:AGS1002 4.0 88.1 1.0 CB C:THR717 4.2 71.1 1.0 CA C:THR612 4.2 82.8 1.0 CB C:ASP677 4.2 77.8 1.0 CG2 C:THR612 4.3 82.8 1.0 O3B C:AGS1002 4.3 88.1 1.0 CB C:LYS611 4.4 78.5 1.0 CG2 C:THR717 4.5 71.1 1.0 O2B C:AGS1002 4.6 88.1 1.0 O2A C:AGS1002 4.8 88.1 1.0 O3A C:AGS1002 4.8 88.1 1.0 C C:LYS611 4.9 78.5 1.0 O3G C:AGS1002 4.9 88.1 1.0 O1A C:AGS1002 4.9 88.1 1.0 N C:ALA678 5.0 78.2 1.0 CA C:ASP677 5.0 77.8 1.0

Magnesium binding site 6 out of 8 in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1003 b:68.0 occ:1.00 O1B D:AGS1001 2.1 73.8 1.0 O2G D:AGS1001 2.1 73.8 1.0 OG1 D:THR213 2.3 75.2 1.0 PG D:AGS1001 3.2 73.8 1.0 S1G D:AGS1001 3.3 73.8 1.0 PB D:AGS1001 3.4 73.8 1.0 CB D:THR213 3.6 75.2 1.0 O3B D:AGS1001 3.9 73.8 1.0 O1A D:AGS1001 4.2 73.8 1.0 NH1 C:ARG332 4.3 66.1 1.0 N D:THR213 4.4 75.2 1.0 O2B D:AGS1001 4.4 73.8 1.0 O3A D:AGS1001 4.4 73.8 1.0 CG2 D:THR213 4.5 75.2 1.0 O3G D:AGS1001 4.5 73.8 1.0 CA D:THR213 4.6 75.2 1.0 PA D:AGS1001 4.9 73.8 1.0

Magnesium binding site 7 out of 8 in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1004 b:72.4 occ:1.00 OG1 D:THR612 2.1 77.2 1.0 O1B D:AGS1002 2.7 81.6 1.0 CB D:THR612 3.0 77.2 1.0 OD1 D:ASP677 3.2 69.8 1.0 O1A D:AGS1002 3.2 81.6 1.0 OD2 D:ASP677 3.3 69.8 1.0 CG2 D:THR612 3.6 77.2 1.0 CG D:ASP677 3.7 69.8 1.0 OD2 C:ASP695 4.0 71.4 1.0 PB D:AGS1002 4.0 81.6 1.0 CA D:THR612 4.3 77.2 1.0 PA D:AGS1002 4.4 81.6 1.0 O2G D:AGS1002 4.5 81.6 1.0 N D:THR612 4.5 77.2 1.0 NH2 D:ARG631 4.6 70.1 1.0 O3A D:AGS1002 4.6 81.6 1.0 O2B D:AGS1002 4.6 81.6 1.0 NH2 D:ARG815 4.9 80.1 1.0 O3G D:AGS1002 4.9 81.6 1.0 NH2 C:ARG756 5.0 71.0 1.0

Magnesium binding site 8 out of 8 in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2A within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1003 b:81.0 occ:1.00 OG1 E:THR612 2.0 87.3 1.0 O2G E:AGS1002 2.1 89.7 1.0 OD1 E:ASP677 2.9 76.3 1.0 PG E:AGS1002 3.4 89.7 1.0 CB E:THR612 3.4 87.3 1.0 OD2 E:ASP677 3.5 76.3 1.0 O3G E:AGS1002 3.5 89.7 1.0 CG E:ASP677 3.6 76.3 1.0 O1A E:AGS1002 3.7 89.7 1.0 OG1 E:THR717 4.0 77.7 1.0 CG2 E:THR612 4.1 87.3 1.0 N E:THR612 4.2 87.3 1.0 NH2 D:ARG756 4.3 76.4 1.0 O3B E:AGS1002 4.3 89.7 1.0 CA E:THR612 4.3 87.3 1.0 CB E:THR717 4.5 77.7 1.0 PA E:AGS1002 4.7 89.7 1.0 S1G E:AGS1002 4.7 89.7 1.0 CG2 E:THR717 4.7 77.7 1.0 CB E:LYS611 4.8 87.7 1.0 O2A E:AGS1002 4.8 89.7 1.0 OD2 D:ASP695 4.8 77.5 1.0 O3A E:AGS1002 4.9 89.7 1.0

C.Deville, K.Franke, A.Mogk, B.Bukau, H.R.Saibil. Two-Step Activation Mechanism of the Clpb Disaggregase For Sequential Substrate Threading By the Main Atpase Motor. Cell Rep V. 27 3433 2019.
ISSN: ESSN 2211-1247
PubMed: 31216466
DOI: 10.1016/J.CELREP.2019.05.075