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Magnesium in PDB 3mx3: Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution, PDB code: 3mx3 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.18 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 153.350, 87.876, 78.253, 90.00, 116.66, 90.00
R / Rfree (%) 16.4 / 21.6

Other elements in 3mx3:

The structure of Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution (pdb code 3mx3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution, PDB code: 3mx3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3mx3

Go back to Magnesium Binding Sites List in 3mx3
Magnesium binding site 1 out of 2 in the Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:10.5
occ:1.00
OD1 A:ASP61 2.0 13.7 1.0
O A:PHE58 2.1 6.9 1.0
O A:HOH778 2.1 15.3 1.0
OE1 A:GLU62 2.1 12.9 1.0
O A:HOH714 2.2 12.8 1.0
O A:HOH691 2.2 11.8 1.0
CG A:ASP61 3.0 11.1 1.0
CD A:GLU62 3.0 11.5 1.0
OD2 A:ASP61 3.2 9.5 1.0
OE2 A:GLU62 3.3 8.3 1.0
C A:PHE58 3.3 9.6 1.0
O A:HOH783 3.8 15.4 1.0
CA A:ILE59 4.0 9.9 1.0
N A:ILE59 4.1 11.2 1.0
CA A:PHE58 4.4 11.1 1.0
CB A:ASP61 4.4 7.8 1.0
N A:GLU62 4.4 9.5 1.0
CG A:GLU62 4.4 13.9 1.0
CD1 A:PHE58 4.5 11.9 1.0
C A:ILE59 4.6 10.6 1.0
N A:ASP61 4.6 9.7 1.0
CG A:PHE58 4.7 12.6 1.0
CE1 A:PHE58 4.8 10.5 1.0
CA A:MSE433 4.8 6.7 1.0
CA A:ASP61 4.9 8.9 1.0
CB A:GLU62 4.9 12.6 1.0

Magnesium binding site 2 out of 2 in 3mx3

Go back to Magnesium Binding Sites List in 3mx3
Magnesium binding site 2 out of 2 in the Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Susd Homolog (BF0972) From Bacteroides Fragilis Nctc 9343 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:12.3
occ:1.00
OD1 B:ASP61 2.0 10.7 1.0
O B:PHE58 2.0 12.6 1.0
O B:HOH676 2.1 11.3 1.0
O B:HOH703 2.1 12.3 1.0
OE1 B:GLU62 2.1 13.1 1.0
O B:HOH726 2.2 13.2 1.0
CG B:ASP61 3.0 13.0 1.0
CD B:GLU62 3.0 9.5 1.0
C B:PHE58 3.2 10.2 1.0
OE2 B:GLU62 3.2 15.4 1.0
OD2 B:ASP61 3.3 12.2 1.0
O B:HOH727 3.9 13.3 1.0
CA B:ILE59 4.0 12.2 1.0
O B:HOH1137 4.0 25.8 1.0
N B:ILE59 4.0 10.2 1.0
CA B:PHE58 4.3 10.7 1.0
N B:GLU62 4.3 9.4 1.0
CB B:ASP61 4.4 8.3 1.0
CG B:GLU62 4.4 12.4 1.0
CD1 B:PHE58 4.5 11.1 1.0
N B:ASP61 4.6 10.4 1.0
C B:ILE59 4.6 10.8 1.0
CG B:PHE58 4.7 12.2 1.0
CA B:MSE433 4.8 8.8 1.0
CA B:ASP61 4.8 10.6 1.0
CB B:GLU62 4.9 14.2 1.0
CE1 B:PHE58 4.9 13.9 1.0
N B:TYR60 4.9 8.2 1.0
C B:ASP61 4.9 10.5 1.0
CG2 B:ILE59 4.9 11.3 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Aug 14 19:30:59 2024

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