Magnesium in PDB 3pit: Crystal Structure of M-RASD41E in Complex with Gppnhp (Type 2)

The structure of Crystal Structure of M-RASD41E in Complex with Gppnhp (Type 2), PDB code: 3pit was solved by S.Muraoka, K.Matsumoto, F.Shima, L.Hu, Y.Ijiri, R.Hirai, J.Liao, T.Kataoka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.97 / 1.55
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	47.111, 89.646, 41.273, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 21.3

The binding sites of Magnesium atom in the Crystal Structure of M-RASD41E in Complex with Gppnhp (Type 2) (pdb code 3pit). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of M-RASD41E in Complex with Gppnhp (Type 2), PDB code: 3pit:

Magnesium binding site 1 out of 1 in the Crystal Structure of M-RASD41E in Complex with Gppnhp (Type 2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of M-RASD41E in Complex with Gppnhp (Type 2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg180 b:7.2 occ:1.00 O2G A:GNP179 2.0 6.8 1.0 OG A:SER27 2.1 6.9 1.0 O A:HOH1002 2.1 8.2 1.0 O2B A:GNP179 2.1 5.3 1.0 OG1 A:THR45 2.1 8.3 1.0 O A:HOH1001 2.2 7.1 1.0 CB A:THR45 3.1 10.2 1.0 CB A:SER27 3.1 5.9 1.0 PG A:GNP179 3.2 6.2 1.0 PB A:GNP179 3.2 5.9 1.0 N3B A:GNP179 3.3 5.7 1.0 N A:SER27 3.8 6.1 1.0 N A:THR45 3.9 9.9 1.0 OD2 A:ASP67 4.0 10.1 1.0 CA A:SER27 4.0 6.3 1.0 O1A A:GNP179 4.1 8.4 1.0 CA A:THR45 4.1 10.4 1.0 OD1 A:ASP67 4.2 7.1 1.0 CG2 A:THR45 4.2 9.7 1.0 O3G A:GNP179 4.2 6.3 1.0 O A:HOH1029 4.2 16.4 1.0 O3A A:GNP179 4.3 6.5 1.0 O1B A:GNP179 4.3 5.9 1.0 O1G A:GNP179 4.3 7.5 1.0 O A:THR68 4.4 7.6 1.0 O A:ASP43 4.4 11.6 0.5 O A:ASP43 4.4 11.4 0.5 CG A:ASP67 4.5 6.9 1.0 PA A:GNP179 4.5 6.5 1.0 O2A A:GNP179 4.6 8.2 1.0 CB A:LYS26 4.8 5.1 1.0 C A:PRO44 4.8 11.0 1.0 C A:LYS26 4.9 5.5 1.0

S.Muraoka, K.Matsumoto, F.Shima, L.Hu, Y.Ijiri, R.Hirai, J.Liao, T.Kataoka. Crystal Structure of M-RASD41E in Complex with Gppnhp (Type 2) To Be Published.