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Magnesium in PDB 3th1: Crystal Structure of Chlorocatechol 1,2-Dioxygenase From Pseudomonas Putida

Protein crystallography data

The structure of Crystal Structure of Chlorocatechol 1,2-Dioxygenase From Pseudomonas Putida, PDB code: 3th1 was solved by J.K.Rustiguel, M.C.Nonato, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.18 / 3.40
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 97.570, 97.570, 423.600, 90.00, 90.00, 120.00
R / Rfree (%) 22.7 / 27.9

Other elements in 3th1:

The structure of Crystal Structure of Chlorocatechol 1,2-Dioxygenase From Pseudomonas Putida also contains other interesting chemical elements:

Iron (Fe) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Chlorocatechol 1,2-Dioxygenase From Pseudomonas Putida (pdb code 3th1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Chlorocatechol 1,2-Dioxygenase From Pseudomonas Putida, PDB code: 3th1:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3th1

Go back to Magnesium Binding Sites List in 3th1
Magnesium binding site 1 out of 2 in the Crystal Structure of Chlorocatechol 1,2-Dioxygenase From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Chlorocatechol 1,2-Dioxygenase From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:25.0
occ:1.00
ND2 A:ASN153 3.1 36.4 1.0
O A:GLY104 4.1 31.9 1.0
N A:GLY104 4.2 28.6 1.0
O A:HOH268 4.2 45.4 0.6
CG A:ASN153 4.3 36.6 1.0
CA A:GLY104 4.5 30.1 1.0
CB A:ARG103 4.6 26.7 1.0
C A:GLY104 4.6 31.3 1.0
CB A:ASN153 4.9 35.6 1.0
MG A:MG304 4.9 29.5 1.0

Magnesium binding site 2 out of 2 in 3th1

Go back to Magnesium Binding Sites List in 3th1
Magnesium binding site 2 out of 2 in the Crystal Structure of Chlorocatechol 1,2-Dioxygenase From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Chlorocatechol 1,2-Dioxygenase From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg304

b:29.5
occ:1.00
OD2 A:ASP241 3.7 33.4 1.0
CG2 A:THR239 3.7 38.6 1.0
OD1 A:ASP241 3.7 40.5 1.0
CG A:ASP241 4.1 39.7 1.0
O A:HOH268 4.5 45.4 0.6
MG A:MG303 4.9 25.0 1.0

Reference:

J.K.Rustiguel, L.R.S.Barbosa, A.P.U.Araujo, M.C.Nonato. Crystal Structure of Chlorocatechol 1,2-Dioxygenase From Pseudomonas Putida To Be Published.
Page generated: Mon Aug 11 03:55:15 2025

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