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Magnesium in PDB 3thv: Crystal Structure of Bacillus Dna Polymerase I Large Fragment Bound to Dna and Ddatp-Dt in Closed Conformation
Enzymatic activity of Crystal Structure of Bacillus Dna Polymerase I Large Fragment Bound to Dna and Ddatp-Dt in Closed Conformation
All present enzymatic activity of Crystal Structure of Bacillus Dna Polymerase I Large Fragment Bound to Dna and Ddatp-Dt in Closed Conformation:
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of Crystal Structure of Bacillus Dna Polymerase I Large Fragment Bound to Dna and Ddatp-Dt in Closed Conformation, PDB code: 3thv
was solved by
W.Wang,
L.S.Beese,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 88.41 / 1.61 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 93.810, 109.270, 150.430, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 19.3 / 22.4 |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of Bacillus Dna Polymerase I Large Fragment Bound to Dna and Ddatp-Dt in Closed Conformation
(pdb code 3thv). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Bacillus Dna Polymerase I Large Fragment Bound to Dna and Ddatp-Dt in Closed Conformation, PDB code: 3thv:
Jump to Magnesium binding site number: 1; 2;
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Bacillus Dna Polymerase I Large Fragment Bound to Dna and Ddatp-Dt in Closed Conformation, PDB code: 3thv:
Jump to Magnesium binding site number: 1; 2;
Magnesium binding site 1 out of 2 in 3thv
Go back to
Magnesium Binding Sites List in 3thv
Magnesium binding site 1 out
of 2 in the Crystal Structure of Bacillus Dna Polymerase I Large Fragment Bound to Dna and Ddatp-Dt in Closed Conformation
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Bacillus Dna Polymerase I Large Fragment Bound to Dna and Ddatp-Dt in Closed Conformation within 5.0Å range:
|
Magnesium binding site 2 out of 2 in 3thv
Go back to
Magnesium Binding Sites List in 3thv
Magnesium binding site 2 out
of 2 in the Crystal Structure of Bacillus Dna Polymerase I Large Fragment Bound to Dna and Ddatp-Dt in Closed Conformation
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Bacillus Dna Polymerase I Large Fragment Bound to Dna and Ddatp-Dt in Closed Conformation within 5.0Å range:
|
Reference:
W.Wang,
H.W.Hellinga,
L.S.Beese.
Structural Evidence For the Rare Tautomer Hypothesis of Spontaneous Mutagenesis. Proc.Natl.Acad.Sci.Usa V. 108 17644 2011.
ISSN: ISSN 0027-8424
PubMed: 22006298
DOI: 10.1073/PNAS.1114496108
Page generated: Mon Aug 11 03:56:09 2025
ISSN: ISSN 0027-8424
PubMed: 22006298
DOI: 10.1073/PNAS.1114496108
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