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Magnesium in PDB 3w6s: Yeast N-Acetyltransferase MPR1 Involved in Oxidative Stress Tolerance Via Proline Metabolism

Protein crystallography data

The structure of Yeast N-Acetyltransferase MPR1 Involved in Oxidative Stress Tolerance Via Proline Metabolism, PDB code: 3w6s was solved by R.Nasuno, Y.Hirano, T.Itoh, T.Hakoshima, T.Hibi, H.Takagi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.27 / 1.90
Space group P 31 1 2
Cell size a, b, c (Å), α, β, γ (°) 83.862, 83.862, 193.819, 90.00, 90.00, 120.00
R / Rfree (%) 16.6 / 18.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Yeast N-Acetyltransferase MPR1 Involved in Oxidative Stress Tolerance Via Proline Metabolism (pdb code 3w6s). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Yeast N-Acetyltransferase MPR1 Involved in Oxidative Stress Tolerance Via Proline Metabolism, PDB code: 3w6s:

Magnesium binding site 1 out of 1 in 3w6s

Go back to Magnesium Binding Sites List in 3w6s
Magnesium binding site 1 out of 1 in the Yeast N-Acetyltransferase MPR1 Involved in Oxidative Stress Tolerance Via Proline Metabolism


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yeast N-Acetyltransferase MPR1 Involved in Oxidative Stress Tolerance Via Proline Metabolism within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:22.6
occ:0.50
OD1 A:ASP26 2.0 23.2 1.0
O A:HOH520 2.0 26.6 1.0
O A:HOH474 2.0 26.9 1.0
CG A:ASP26 3.0 22.3 1.0
OD2 A:ASP26 3.3 25.9 1.0
OG A:SER27 4.0 19.5 1.0
N A:ASP26 4.4 15.7 1.0
CB A:ASP26 4.4 17.7 1.0
N A:SER27 4.5 15.5 1.0
CA A:ASP26 4.8 16.3 1.0
CB A:SER27 4.9 17.2 1.0

Reference:

R.Nasuno, Y.Hirano, T.Itoh, T.Hakoshima, T.Hibi, H.Takagi. Structural and Functional Analysis of the Yeast N-Acetyltransferase MPR1 Involved in Oxidative Stress Tolerance Via Proline Metabolism Proc.Natl.Acad.Sci.Usa V. 110 11821 2013.
ISSN: ISSN 0027-8424
PubMed: 23818613
DOI: 10.1073/PNAS.1300558110
Page generated: Thu Aug 15 13:13:32 2024

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