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Magnesium in PDB 4een: Crystal Structure of Had Family Hydrolase DR_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) with Bound Magnesium

Protein crystallography data

The structure of Crystal Structure of Had Family Hydrolase DR_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) with Bound Magnesium, PDB code: 4een was solved by Y.Patskovsky, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, J.A.Gerlt, K.N.Allen, D.Dunaway-Mariano, S.C.Almo, Enzyme Functioninitiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.03 / 1.65
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 55.456, 55.456, 274.172, 90.00, 90.00, 120.00
R / Rfree (%) 20.2 / 23.5

Other elements in 4een:

The structure of Crystal Structure of Had Family Hydrolase DR_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) with Bound Magnesium also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Had Family Hydrolase DR_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) with Bound Magnesium (pdb code 4een). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Had Family Hydrolase DR_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) with Bound Magnesium, PDB code: 4een:

Magnesium binding site 1 out of 1 in 4een

Go back to Magnesium Binding Sites List in 4een
Magnesium binding site 1 out of 1 in the Crystal Structure of Had Family Hydrolase DR_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) with Bound Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Had Family Hydrolase DR_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) with Bound Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:21.7
occ:1.00
O A:HOH402 2.0 25.7 1.0
OD2 A:ASP12 2.1 19.9 1.0
OD1 A:ASP171 2.1 19.2 1.0
O A:HOH404 2.1 21.2 1.0
O A:ASP14 2.1 18.8 1.0
O A:HOH403 2.1 22.4 1.0
CG A:ASP12 3.1 18.5 1.0
CG A:ASP171 3.2 15.2 1.0
C A:ASP14 3.3 20.7 1.0
OD1 A:ASP12 3.5 20.1 1.0
OD2 A:ASP171 3.5 21.4 1.0
O A:HOH551 3.9 38.3 1.0
OE1 A:GLU170 4.0 19.6 1.0
CA A:ASP14 4.1 19.7 1.0
CB A:ASP14 4.1 19.7 1.0
O A:HOH405 4.2 24.9 1.0
O A:HOH401 4.3 29.6 1.0
N A:ASP14 4.3 19.4 1.0
CB A:ASP12 4.4 19.3 1.0
N A:GLY15 4.4 19.3 1.0
CB A:ASP171 4.5 17.9 1.0
N A:ASP171 4.5 17.1 1.0
OG A:SER172 4.5 20.7 1.0
CA A:GLY15 4.6 19.1 1.0
CA A:ASP171 4.8 18.5 1.0
C A:ASP171 4.8 18.7 1.0
CB A:SER172 4.9 22.3 1.0
CG2 A:VAL16 4.9 22.0 1.0
C A:LEU13 5.0 22.9 1.0
N A:SER172 5.0 21.7 1.0

Reference:

Y.Patskovsky, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, K.N.Allen, D.Dunaway-Mariano, J.A.Gerlt, S.C.Almo. Crystal Structure of Had Hydrolase DR_1622 Deinococcus Radiodurans R1 (Target Efi-501256) To Be Published.
Page generated: Fri Aug 16 14:28:58 2024

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