Magnesium in PDB 4gjp: Crystal Structure of the Tal Effector DHAX3 Bound to Dsdna Containing Repetitive Methyl-Cpg

The structure of Crystal Structure of the Tal Effector DHAX3 Bound to Dsdna Containing Repetitive Methyl-Cpg, PDB code: 4gjp was solved by N.Yan, D.Deng, C.Y.Yan, P.Yin, X.J.Pan, Y.G.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.44 / 1.94
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	81.203, 87.114, 88.147, 90.00, 102.85, 90.00
R / Rfree (%)	20.1 / 22.5

The binding sites of Magnesium atom in the Crystal Structure of the Tal Effector DHAX3 Bound to Dsdna Containing Repetitive Methyl-Cpg (pdb code 4gjp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Tal Effector DHAX3 Bound to Dsdna Containing Repetitive Methyl-Cpg, PDB code: 4gjp:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Tal Effector DHAX3 Bound to Dsdna Containing Repetitive Methyl-Cpg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Tal Effector DHAX3 Bound to Dsdna Containing Repetitive Methyl-Cpg within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg101 b:43.4 occ:1.00 O I:HOH142 2.1 52.4 1.0 O A:HOH832 2.1 35.3 1.0 O J:HOH238 2.1 38.6 1.0 O A:HOH1076 2.1 54.5 1.0 O J:HOH239 2.2 42.3 1.0 O I:HOH155 2.4 59.4 1.0 N7 J:DG-2 3.9 39.4 1.0 O6 J:DG-2 4.0 38.6 1.0 OD2 A:ASP301 4.3 30.0 1.0 O6 J:DG-1 4.3 34.1 1.0 C5 J:DG-2 4.6 40.3 1.0 O4 I:DT0 4.6 32.1 1.0 N4 I:DC1 4.7 29.3 1.0 C6 J:DG-2 4.7 38.3 1.0 C8 J:DG-2 4.9 40.5 1.0 NH1 A:ARG266 5.0 31.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Tal Effector DHAX3 Bound to Dsdna Containing Repetitive Methyl-Cpg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Tal Effector DHAX3 Bound to Dsdna Containing Repetitive Methyl-Cpg within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg801 b:75.7 occ:1.00 O H:HOH108 1.6 76.1 1.0 O B:HOH1041 2.0 57.5 1.0 O B:HOH1109 2.0 57.3 1.0 O B:HOH1091 2.1 69.6 1.0 OD1 B:ASP641 3.3 33.3 1.0 O B:HOH1048 3.5 53.6 1.0 OD1 B:ASN572 3.8 37.9 1.0 O B:HOH1081 3.9 44.3 1.0 OD2 B:ASP641 4.0 32.7 1.0 CG B:ASP641 4.1 31.8 1.0 N7 H:DA-12 4.1 57.1 1.0 N6 H:DA-12 4.4 52.9 1.0 O G:HOH133 4.5 44.5 1.0 O H:HOH117 4.6 59.9 1.0 O6 H:DG-11 4.8 45.8 1.0 N4 G:DC11 4.9 31.2 1.0 C5 H:DA-12 5.0 54.3 1.0 CG B:ASN572 5.0 38.1 1.0

N.Yan, D.Deng, C.Y.Yan, P.Yin, X.J.Pan, Y.G.Shi. Crystal Structure of A Protein Complex To Be Published.