Magnesium in PDB 4nv3: The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Valine.

The structure of The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Valine., PDB code: 4nv3 was solved by K.Tan, H.Li, R.Jedrzejczak, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.12 / 1.09
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	98.869, 100.932, 150.445, 90.00, 90.00, 90.00
R / Rfree (%)	12.8 / 14.3

The binding sites of Magnesium atom in the The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Valine. (pdb code 4nv3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Valine., PDB code: 4nv3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Valine.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Valine. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:9.1 occ:1.00 O A:ILE388 2.3 10.2 1.0 O A:VAL166 2.3 8.7 1.0 O A:GLY163 2.3 10.7 1.0 O A:HOH646 2.3 11.8 1.0 O A:PRO160 2.4 9.4 1.0 C A:ILE388 3.3 10.2 1.0 C A:PRO160 3.4 9.0 1.0 C A:VAL166 3.4 8.0 1.0 C A:GLY163 3.5 9.8 1.0 O A:HOH1090 3.7 24.1 0.9 CA A:PRO160 3.7 9.6 1.0 N A:VAL166 3.9 7.9 1.0 CA A:VAL166 4.0 8.2 1.0 CB A:PRO160 4.0 11.6 1.0 CA A:ILE388 4.1 11.1 1.0 N A:GLY389 4.1 9.8 1.0 CA A:GLY389 4.1 9.9 1.0 O A:HOH1093 4.2 24.1 1.0 CB A:VAL166 4.2 8.7 1.0 CA A:ASP164 4.3 10.7 1.0 N A:ASP164 4.3 9.6 1.0 N A:GLY163 4.4 10.2 1.0 C A:ASP164 4.4 9.4 1.0 O A:HOH640 4.4 14.4 0.9 CB A:ILE388 4.4 13.4 1.0 O A:HOH645 4.5 11.4 1.0 N A:ALA167 4.5 7.9 1.0 CA A:GLY163 4.5 10.6 1.0 N A:GLU161 4.6 9.6 1.0 N A:TYR165 4.7 8.4 1.0 O A:ASP164 4.8 10.7 1.0 CA A:ALA167 4.9 7.9 1.0 C A:GLY389 4.9 9.0 1.0 CG1 A:VAL166 5.0 9.4 1.0 C A:TYR165 5.0 8.4 1.0

Magnesium binding site 2 out of 2 in the The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Valine.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Valine. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:9.8 occ:1.00 O B:ILE388 2.2 12.2 1.0 O B:VAL166 2.3 8.8 1.0 O B:GLY163 2.3 10.1 1.0 O B:HOH770 2.3 17.8 1.0 O B:PRO160 2.4 9.4 1.0 C B:ILE388 3.3 11.5 1.0 C B:PRO160 3.4 8.7 1.0 C B:VAL166 3.4 8.1 1.0 C B:GLY163 3.5 10.0 1.0 O B:HOH882 3.6 14.8 0.8 CA B:PRO160 3.7 9.8 1.0 N B:VAL166 3.9 8.0 1.0 CA B:VAL166 4.0 8.2 1.0 O B:HOH832 4.0 16.9 0.8 CB B:PRO160 4.0 12.1 1.0 O B:HOH823 4.0 14.7 0.7 CA B:GLY389 4.0 9.6 1.0 N B:GLY389 4.1 9.8 1.0 CB B:VAL166 4.2 8.8 1.0 CA B:ILE388 4.3 12.0 1.0 N B:ASP164 4.3 10.0 1.0 CA B:ASP164 4.3 10.3 1.0 N B:GLY163 4.3 9.8 1.0 C B:ASP164 4.4 9.7 1.0 N B:ALA167 4.5 8.1 1.0 CA B:GLY163 4.5 10.7 1.0 CG1 B:ILE388 4.5 14.9 1.0 N B:GLU161 4.6 9.2 1.0 O B:HOH834 4.6 17.0 1.0 N B:TYR165 4.7 9.0 1.0 O B:ASP164 4.8 11.4 1.0 CA B:ALA167 4.8 8.3 1.0 C B:GLY389 4.9 9.2 1.0 CB B:ILE388 5.0 13.1 1.0 CG1 B:VAL166 5.0 9.6 1.0 C B:TYR165 5.0 8.6 1.0

K.Tan, H.Li, R.Jedrzejczak, A.Joachimiak. The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Valine. To Be Published.