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Magnesium in PDB 4qg5: Crystal Structure of Phosphoglucomutase From Leishmania Major at 3.5 Angstrom Resolution

Enzymatic activity of Crystal Structure of Phosphoglucomutase From Leishmania Major at 3.5 Angstrom Resolution

All present enzymatic activity of Crystal Structure of Phosphoglucomutase From Leishmania Major at 3.5 Angstrom Resolution:
5.4.2.2;

Protein crystallography data

The structure of Crystal Structure of Phosphoglucomutase From Leishmania Major at 3.5 Angstrom Resolution, PDB code: 4qg5 was solved by B.Waugh, U.Sen, R.Banerjee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.17 / 3.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 202.358, 114.971, 125.915, 90.00, 110.03, 90.00
R / Rfree (%) 23.8 / 31.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Phosphoglucomutase From Leishmania Major at 3.5 Angstrom Resolution (pdb code 4qg5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of Phosphoglucomutase From Leishmania Major at 3.5 Angstrom Resolution, PDB code: 4qg5:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 4qg5

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Magnesium binding site 1 out of 4 in the Crystal Structure of Phosphoglucomutase From Leishmania Major at 3.5 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Phosphoglucomutase From Leishmania Major at 3.5 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:37.2
occ:1.00
 OG A:SER118 1.9 0.0 1.0
OD1 A:ASP299 2.0 54.1 1.0
OD1 A:ASP303 2.1 45.0 1.0
OD2 A:ASP303 2.1 49.0 1.0
OD1 A:ASP301 2.1 59.5 1.0
CG A:ASP303 2.3 49.7 1.0
CB A:SER118 2.9 0.6 1.0
CG A:ASP301 3.0 52.4 1.0
OD2 A:ASP301 3.2 62.5 1.0
CG A:ASP299 3.2 56.2 1.0
CB A:ASP303 3.7 49.7 1.0
NE A:ARG304 3.9 71.0 1.0
OD2 A:ASP299 4.0 66.4 1.0
CA A:SER118 4.0 0.6 1.0
CB A:ASP299 4.2 50.8 1.0
NH2 A:ARG304 4.2 82.9 1.0
CZ A:ARG304 4.3 72.7 1.0
CB A:ASP301 4.4 43.5 1.0
CG A:ARG304 4.4 64.0 1.0
N A:ASP301 4.5 48.5 1.0
N A:ASP303 4.6 56.6 1.0
CA A:ASP303 4.6 50.4 1.0
CD A:ARG304 4.7 61.7 1.0
N A:ARG304 4.7 53.8 1.0
C A:SER118 4.7 0.8 1.0
CA A:ASP301 4.9 45.4 1.0
CB A:ARG304 4.9 62.8 1.0
C A:ASP303 5.0 45.5 1.0
O A:SER118 5.0 0.8 1.0

Magnesium binding site 2 out of 4 in 4qg5

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Magnesium binding site 2 out of 4 in the Crystal Structure of Phosphoglucomutase From Leishmania Major at 3.5 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Phosphoglucomutase From Leishmania Major at 3.5 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:32.1
occ:1.00
 OD1 B:ASP299 2.0 39.6 1.0
OD2 B:ASP301 2.1 38.9 1.0
OD2 B:ASP303 2.2 42.0 1.0
OD1 B:ASP303 2.2 52.4 1.0
OG B:SER118 2.3 99.4 1.0
CG B:ASP303 2.5 52.9 1.0
CG B:ASP299 2.9 49.4 1.0
CG B:ASP301 3.0 44.5 1.0
CB B:SER118 3.1 0.8 1.0
OD1 B:ASP301 3.2 58.8 1.0
OD2 B:ASP299 3.6 62.0 1.0
CB B:ASP299 3.9 46.8 1.0
CB B:ASP303 4.0 45.4 1.0
CB B:ASP301 4.3 42.4 1.0
CD B:ARG304 4.5 63.8 1.0
CA B:SER118 4.6 0.4 1.0
CG B:ARG304 4.7 67.4 1.0
N B:ASP301 4.7 53.5 1.0
N B:ASP303 4.8 50.2 1.0
CA B:ASP303 4.9 38.5 1.0
NE B:ARG304 4.9 66.1 1.0
N B:ARG304 5.0 53.0 1.0
CA B:ASP301 5.0 44.8 1.0

Magnesium binding site 3 out of 4 in 4qg5

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Magnesium binding site 3 out of 4 in the Crystal Structure of Phosphoglucomutase From Leishmania Major at 3.5 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Phosphoglucomutase From Leishmania Major at 3.5 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:29.6
occ:1.00
 OG C:SER118 1.9 86.2 1.0
OD1 C:ASP303 2.0 48.1 1.0
OD1 C:ASP301 2.0 49.4 1.0
CG C:ASP303 2.1 44.9 1.0
OD2 C:ASP303 2.1 31.7 1.0
OD2 C:ASP301 2.2 53.9 1.0
CG C:ASP301 2.4 43.8 1.0
CB C:SER118 2.8 91.2 1.0
OD2 C:ASP299 3.0 55.6 1.0
CB C:ASP303 3.4 49.2 1.0
NH1 C:ARG304 3.7 71.8 1.0
CB C:ASP301 3.9 40.2 1.0
CA C:SER118 3.9 94.1 1.0
CG C:ASP299 4.1 49.2 1.0
N C:ASP303 4.3 47.2 1.0
CA C:ASP303 4.3 51.5 1.0
OD1 C:ASP299 4.4 49.3 1.0
N C:ASP301 4.7 35.3 1.0
CA C:ASP301 4.7 37.4 1.0
C C:ASP303 4.8 47.0 1.0
C C:SER118 4.8 0.2 1.0
C C:ASP301 4.8 33.4 1.0
N C:ARG304 4.9 60.2 1.0
CG C:ARG304 5.0 62.4 1.0
N C:SER118 5.0 98.2 1.0

Magnesium binding site 4 out of 4 in 4qg5

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Magnesium binding site 4 out of 4 in the Crystal Structure of Phosphoglucomutase From Leishmania Major at 3.5 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Phosphoglucomutase From Leishmania Major at 3.5 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:19.7
occ:1.00
 OD1 D:ASP301 2.0 45.1 1.0
OD2 D:ASP299 2.1 48.4 1.0
OD1 D:ASP303 2.1 56.0 1.0
CG D:ASP301 2.5 45.8 1.0
OD2 D:ASP301 2.6 48.5 1.0
CG D:ASP303 3.0 50.4 1.0
CG D:ASP299 3.3 48.3 1.0
OD2 D:ASP303 3.4 50.0 1.0
OG D:SER118 3.6 82.7 1.0
CB D:ASP301 3.8 40.2 1.0
CB D:SER118 3.9 88.3 1.0
OD1 D:ASP299 4.1 55.2 1.0
CB D:ASP303 4.2 35.4 1.0
CA D:SER118 4.3 0.1 1.0
CB D:ASP299 4.3 55.6 1.0
N D:ASP301 4.4 49.2 1.0
CG D:ARG304 4.5 63.3 1.0
CA D:ASP301 4.6 32.8 1.0
N D:ASP303 4.6 47.4 1.0
NE D:ARG304 4.7 86.7 1.0
CZ D:ARG304 4.9 81.0 1.0
CA D:ASP303 4.9 36.8 1.0
C D:ASP301 5.0 35.1 1.0
NH2 D:ARG304 5.0 67.6 1.0

Reference:

B.Waugh, U.Sen, R.Banerjee. Crystal Structure of Phosphoglucomutase From Leishmania Major at 3.5 Angstrom Resolution To Be Published.
Page generated: Tue Aug 20 01:57:41 2024

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