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Magnesium in PDB 5e9t: Crystal Structure of Gtfa/B Complex

Protein crystallography data

The structure of Crystal Structure of Gtfa/B Complex, PDB code: 5e9t was solved by Y.Chen, T.A.Rapoport, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 122.12 / 2.92
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 155.930, 196.410, 220.860, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 27.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Gtfa/B Complex (pdb code 5e9t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Gtfa/B Complex, PDB code: 5e9t:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5e9t

Go back to Magnesium Binding Sites List in 5e9t
Magnesium binding site 1 out of 2 in the Crystal Structure of Gtfa/B Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Gtfa/B Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:14.3
occ:1.00
OE1 A:GLU230 3.5 35.0 1.0
OD1 D:ASP83 3.9 37.2 1.0
OD2 D:ASP83 4.0 38.1 1.0
NE1 D:TRP70 4.4 14.1 1.0
CG D:ASP83 4.4 32.5 1.0
CD A:GLU230 4.5 30.8 1.0
NE2 A:GLN226 4.7 18.9 1.0
OE2 A:GLU230 4.8 24.2 1.0
NH2 A:ARG202 4.9 48.9 1.0
NH1 A:ARG202 4.9 49.2 1.0

Magnesium binding site 2 out of 2 in 5e9t

Go back to Magnesium Binding Sites List in 5e9t
Magnesium binding site 2 out of 2 in the Crystal Structure of Gtfa/B Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Gtfa/B Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:20.9
occ:1.00
OD1 B:ASP83 3.8 44.3 1.0
OD2 B:ASP83 3.8 40.9 1.0
OE1 C:GLU230 4.0 53.1 1.0
CG B:ASP83 4.3 40.7 1.0
NE1 B:TRP70 4.5 17.8 1.0
OE2 C:GLU230 4.5 48.8 1.0
NH2 C:ARG202 4.6 40.6 1.0
CD C:GLU230 4.7 48.5 1.0

Reference:

Y.Chen, R.Seepersaud, B.A.Bensing, P.M.Sullam, T.A.Rapoport. Mechanism of A Cytosolic O-Glycosyltransferase Essential For the Synthesis of A Bacterial Adhesion Protein. Proc.Natl.Acad.Sci.Usa V. 113 E1190 2016.
ISSN: ESSN 1091-6490
PubMed: 26884191
DOI: 10.1073/PNAS.1600494113
Page generated: Sun Sep 29 03:32:35 2024

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