Atomistry » Magnesium » PDB 5iwx-5j2n » 5ixt
Atomistry »
  Magnesium »
    PDB 5iwx-5j2n »
      5ixt »

Magnesium in PDB 5ixt: The Crystal Structure of the Arabidopsis Receptor Kinase Haesa Lrr Ectdomain in Complex with A N-Terminal Extended Ida Peptide Hormone Ligand.

Enzymatic activity of The Crystal Structure of the Arabidopsis Receptor Kinase Haesa Lrr Ectdomain in Complex with A N-Terminal Extended Ida Peptide Hormone Ligand.

All present enzymatic activity of The Crystal Structure of the Arabidopsis Receptor Kinase Haesa Lrr Ectdomain in Complex with A N-Terminal Extended Ida Peptide Hormone Ligand.:
2.7.10.1; 2.7.11.1;

Protein crystallography data

The structure of The Crystal Structure of the Arabidopsis Receptor Kinase Haesa Lrr Ectdomain in Complex with A N-Terminal Extended Ida Peptide Hormone Ligand., PDB code: 5ixt was solved by J.Santiago, M.Hothorn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 128.97 / 1.94
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 148.921, 148.921, 58.022, 90.00, 90.00, 120.00
R / Rfree (%) 17.9 / 20.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of the Arabidopsis Receptor Kinase Haesa Lrr Ectdomain in Complex with A N-Terminal Extended Ida Peptide Hormone Ligand. (pdb code 5ixt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of the Arabidopsis Receptor Kinase Haesa Lrr Ectdomain in Complex with A N-Terminal Extended Ida Peptide Hormone Ligand., PDB code: 5ixt:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5ixt

Go back to Magnesium Binding Sites List in 5ixt
Magnesium binding site 1 out of 2 in the The Crystal Structure of the Arabidopsis Receptor Kinase Haesa Lrr Ectdomain in Complex with A N-Terminal Extended Ida Peptide Hormone Ligand.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of the Arabidopsis Receptor Kinase Haesa Lrr Ectdomain in Complex with A N-Terminal Extended Ida Peptide Hormone Ligand. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg714

b:83.8
occ:1.00
OG A:SER326 2.9 76.9 1.0
CB A:SER326 3.4 76.1 1.0
N A:SER326 3.6 75.4 1.0
CB A:PRO324 3.8 72.8 1.0
N A:ASN303 3.8 79.1 1.0
CB A:ASP302 3.9 83.8 1.0
N A:GLU325 4.0 74.9 1.0
CA A:SER326 4.1 76.0 1.0
C A:PRO324 4.4 73.0 1.0
CA A:PRO324 4.4 73.4 1.0
CA A:ASP302 4.5 83.4 1.0
CA A:ASN303 4.5 81.0 1.0
C A:GLU325 4.6 79.5 1.0
CA A:GLU325 4.6 78.0 1.0
CB A:GLU325 4.6 86.3 1.0
C A:ASP302 4.6 80.1 1.0
ND2 A:ASN303 4.7 94.2 1.0
CG A:ASP302 4.9 93.0 1.0

Magnesium binding site 2 out of 2 in 5ixt

Go back to Magnesium Binding Sites List in 5ixt
Magnesium binding site 2 out of 2 in the The Crystal Structure of the Arabidopsis Receptor Kinase Haesa Lrr Ectdomain in Complex with A N-Terminal Extended Ida Peptide Hormone Ligand.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of the Arabidopsis Receptor Kinase Haesa Lrr Ectdomain in Complex with A N-Terminal Extended Ida Peptide Hormone Ligand. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg715

b:71.7
occ:1.00
OG A:SER459 3.0 72.2 0.2
OG A:SER459 3.2 82.6 0.8
OG A:SER481 3.2 81.4 1.0
CB A:SER459 3.4 81.3 0.8
CB A:SER459 3.5 75.8 0.2
N A:SER459 3.5 74.3 1.0
CB A:ARG457 3.5 72.4 1.0
CA A:ARG457 3.6 74.5 1.0
C A:ARG457 3.6 76.6 1.0
N A:ILE458 3.6 75.1 1.0
CB A:SER435 3.6 79.8 1.0
CB A:SER481 3.7 80.1 1.0
O A:SER481 3.8 75.8 1.0
OG A:SER435 3.9 78.5 1.0
CA A:SER459 4.1 76.8 0.8
CA A:SER459 4.1 75.8 0.2
CG A:ARG457 4.1 71.1 1.0
O A:ARG457 4.2 74.8 1.0
C A:SER481 4.4 84.6 1.0
C A:ILE458 4.5 76.3 1.0
CA A:ILE458 4.5 76.8 1.0
CA A:SER481 4.7 79.7 1.0
CD A:ARG457 4.9 75.3 1.0
CA A:SER435 5.0 74.4 1.0
N A:ARG457 5.0 72.0 1.0

Reference:

J.Santiago, B.Brandt, M.Wildhagen, U.Hohmann, L.A.Hothorn, M.A.Butenko, M.Hothorn. Mechanistic Insight Into A Peptide Hormone Signaling Complex Mediating Floral Organ Abscission. Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27058169
DOI: 10.7554/ELIFE.15075
Page generated: Tue Aug 12 11:55:23 2025

Last articles

Mg in 6RKC
Mg in 6RL4
Mg in 6RL6
Mg in 6RKE
Mg in 6RL3
Mg in 6RKM
Mg in 6RKK
Mg in 6RKI
Mg in 6RKD
Mg in 6RIQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy