Magnesium in PDB 5ltk: Crystal Structure of the PRP43-Adp-BEF3 Complex (in Hexagonal Space Group)

The structure of Crystal Structure of the PRP43-Adp-BEF3 Complex (in Hexagonal Space Group), PDB code: 5ltk was solved by M.J.Tauchert, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	92.17 / 3.24
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	184.342, 184.342, 82.317, 90.00, 90.00, 120.00
R / Rfree (%)	18.2 / 21.7

The structure of Crystal Structure of the PRP43-Adp-BEF3 Complex (in Hexagonal Space Group) also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Crystal Structure of the PRP43-Adp-BEF3 Complex (in Hexagonal Space Group) (pdb code 5ltk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the PRP43-Adp-BEF3 Complex (in Hexagonal Space Group), PDB code: 5ltk:

Magnesium binding site 1 out of 1 in the Crystal Structure of the PRP43-Adp-BEF3 Complex (in Hexagonal Space Group)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the PRP43-Adp-BEF3 Complex (in Hexagonal Space Group) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:87.1 occ:1.00 F3 A:BEF802 1.7 0.7 1.0 O1B A:ADP801 2.0 96.8 1.0 O A:HOH903 2.1 65.7 1.0 O A:HOH904 2.1 78.8 1.0 O A:HOH902 2.1 62.0 1.0 OG1 A:THR126 2.1 69.0 1.0 O3B A:ADP801 2.7 76.6 1.0 PB A:ADP801 2.8 63.7 1.0 BE A:BEF802 2.9 81.3 1.0 CB A:THR126 3.1 60.6 1.0 O2A A:ADP801 3.6 85.6 1.0 F1 A:BEF802 3.8 76.9 1.0 OE2 A:GLU219 3.8 84.6 1.0 O3A A:ADP801 3.9 0.4 1.0 O2B A:ADP801 4.0 64.1 1.0 N A:THR126 4.0 56.1 1.0 F2 A:BEF802 4.0 0.4 1.0 CG2 A:THR126 4.1 57.3 1.0 CA A:THR126 4.2 58.5 1.0 PA A:ADP801 4.2 62.3 1.0 OD2 A:ASP218 4.3 60.9 1.0 CA A:SER387 4.3 91.6 1.0 O A:HOH901 4.3 42.2 0.6 OG A:SER387 4.6 96.4 1.0 CE A:LYS125 4.6 64.7 1.0 O1A A:ADP801 4.6 69.8 1.0 CB A:SER387 4.7 82.5 1.0 NZ A:LYS125 4.7 71.9 1.0 NH2 A:ARG435 4.7 0.5 1.0 OD1 A:ASP218 4.8 95.3 1.0 CG A:ASP218 4.9 81.5 1.0 CD A:GLU219 5.0 91.4 1.0 CB A:LYS125 5.0 60.9 1.0

M.J.Tauchert, J.B.Fourmann, R.Luhrmann, R.Ficner. Structural Insights Into the Mechanism of the Deah-Box Rna Helicase PRP43. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 28092261
DOI: 10.7554/ELIFE.21510