Magnesium in PDB 5mm4: Ustilago Maydis Kinesin-5 Motor Domain in the Amppnp State Bound to Microtubules

The binding sites of Magnesium atom in the Ustilago Maydis Kinesin-5 Motor Domain in the Amppnp State Bound to Microtubules (pdb code 5mm4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Ustilago Maydis Kinesin-5 Motor Domain in the Amppnp State Bound to Microtubules, PDB code: 5mm4:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Ustilago Maydis Kinesin-5 Motor Domain in the Amppnp State Bound to Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ustilago Maydis Kinesin-5 Motor Domain in the Amppnp State Bound to Microtubules within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg401 b:69.2 occ:1.00 O2B K:ANP402 2.1 70.6 1.0 O2A K:ANP402 2.1 70.6 1.0 N K:HIS117 2.2 0.4 1.0 N K:THR116 2.2 0.8 1.0 CG2 K:THR116 2.6 0.8 1.0 CA K:THR116 2.6 0.8 1.0 C K:THR116 2.7 0.8 1.0 C K:GLY114 2.9 0.4 1.0 CB K:THR116 3.1 0.8 1.0 N K:LYS115 3.1 0.3 1.0 C K:LYS115 3.1 0.3 1.0 CA K:GLY114 3.2 0.4 1.0 O K:GLY114 3.3 0.4 1.0 CA K:HIS117 3.4 0.4 1.0 PA K:ANP402 3.4 70.6 1.0 PB K:ANP402 3.4 70.6 1.0 CB K:HIS117 3.6 0.4 1.0 CA K:LYS115 3.7 0.3 1.0 O3A K:ANP402 3.7 70.6 1.0 O K:THR116 3.8 0.8 1.0 O K:LYS115 3.9 0.3 1.0 O1B K:ANP402 4.1 70.6 1.0 N K:GLY114 4.1 0.4 1.0 O5' K:ANP402 4.2 70.6 1.0 OG1 K:THR116 4.3 0.8 1.0 O1A K:ANP402 4.4 70.6 1.0 O1G K:ANP402 4.5 70.6 1.0 N K:THR118 4.5 0.7 1.0 C K:HIS117 4.5 0.4 1.0 N3B K:ANP402 4.5 70.6 1.0 O3G K:ANP402 4.6 70.6 1.0 CB K:LYS115 4.6 0.3 1.0 PG K:ANP402 4.8 70.6 1.0 C3' K:ANP402 5.0 70.6 1.0

Magnesium binding site 2 out of 2 in the Ustilago Maydis Kinesin-5 Motor Domain in the Amppnp State Bound to Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ustilago Maydis Kinesin-5 Motor Domain in the Amppnp State Bound to Microtubules within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:70.1 occ:1.00 O2B A:GTP501 2.0 72.0 1.0 O3G A:GTP501 2.1 72.0 1.0 O3B A:GTP501 2.1 72.0 1.0 OG1 A:THR145 2.1 0.7 1.0 PG A:GTP501 2.3 72.0 1.0 PB A:GTP501 2.5 72.0 1.0 O2G A:GTP501 2.8 72.0 1.0 CB A:THR145 3.1 0.7 1.0 OD1 A:ASP98 3.5 0.6 1.0 O3A A:GTP501 3.5 72.0 1.0 OD2 A:ASP98 3.5 0.6 1.0 O1B A:GTP501 3.6 72.0 1.0 N A:THR145 3.8 0.7 1.0 O1G A:GTP501 3.8 72.0 1.0 CG A:ASP98 3.8 0.6 1.0 CA A:THR145 4.1 0.7 1.0 CG2 A:THR145 4.2 0.7 1.0 N A:GLN11 4.6 0.3 1.0 NZ B:LYS254 4.6 0.0 1.0 N A:GLY144 4.6 0.4 1.0 CA A:GLY10 4.8 0.2 1.0 PA A:GTP501 4.9 72.0 1.0 C A:GLY144 4.9 0.4 1.0 CB A:GLN11 4.9 0.3 1.0

O.Von Loeffelholz, C.Ann Moores. Cryo-Em Structure of the Ustilago Maydis Kinesin-5 Motor Domain Bound to Microtubules. J.Struct.Biol. 2019.
ISSN: ESSN 1095-8657
PubMed: 31288039
DOI: 10.1016/J.JSB.2019.07.003