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Magnesium in PDB 5myi: Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling.

Enzymatic activity of Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling.

All present enzymatic activity of Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling.:
3.6.1.23;

Protein crystallography data

The structure of Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling., PDB code: 5myi was solved by J.Donderis, J.Bowring, E.Maiques, J.R.Ciges-Tomas, C.Alite, I.Mehmedov, M.A.Tormo-Mas, J.R.Penades, A.Marina, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.37 / 1.90
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 79.450, 79.450, 125.810, 90.00, 90.00, 120.00
R / Rfree (%) 16.5 / 20.9

Other elements in 5myi:

The structure of Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling. also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Calcium (Ca) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling. (pdb code 5myi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling., PDB code: 5myi:

Magnesium binding site 1 out of 1 in 5myi

Go back to Magnesium Binding Sites List in 5myi
Magnesium binding site 1 out of 1 in the Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Convergent Evolution Involving Dimeric and Trimeric Dutpases in Signalling. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg207

b:24.4
occ:1.00
 O D:HOH307 2.1 41.5 1.0
O D:HOH346 2.2 34.8 1.0
O D:HOH330 2.3 36.1 1.0
OD2 D:ASP97 2.6 48.0 1.0
CG D:ASP97 3.6 46.8 1.0
CB D:ASP97 4.0 43.2 1.0
OE1 D:GLU94 4.3 48.8 1.0
OE2 D:GLU98 4.6 41.8 1.0
O D:HOH374 4.6 51.5 1.0
OE2 D:GLU94 4.7 52.6 1.0
OD1 D:ASP97 4.7 39.1 1.0
CD D:GLU94 4.8 49.1 1.0
O D:HOH347 5.0 40.1 1.0

Reference:

J.Donderis, J.Bowring, E.Maiques, J.R.Ciges-Tomas, C.Alite, I.Mehmedov, M.A.Tormo-Mas, J.R.Penades, A.Marina. Convergent Evolution Involving Dimeric and Trimeric Dutpases in Pathogenicity Island Mobilization. Plos Pathog. V. 13 06581 2017.
ISSN: ESSN 1553-7374
PubMed: 28892519
DOI: 10.1371/JOURNAL.PPAT.1006581
Page generated: Tue Aug 12 16:09:35 2025

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