Magnesium in PDB 5oqm: Structure of Yeast Transcription Pre-Initiation Complex with Tfiih and Core Mediator

All present enzymatic activity of Structure of Yeast Transcription Pre-Initiation Complex with Tfiih and Core Mediator:
2.7.7.6; 3.6.4.12;

The structure of Structure of Yeast Transcription Pre-Initiation Complex with Tfiih and Core Mediator also contains other interesting chemical elements:

Zinc	(Zn)	16 atoms
Iron	(Fe)	4 atoms

The binding sites of Magnesium atom in the Structure of Yeast Transcription Pre-Initiation Complex with Tfiih and Core Mediator (pdb code 5oqm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Yeast Transcription Pre-Initiation Complex with Tfiih and Core Mediator, PDB code: 5oqm:

Magnesium binding site 1 out of 1 in the Structure of Yeast Transcription Pre-Initiation Complex with Tfiih and Core Mediator


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Yeast Transcription Pre-Initiation Complex with Tfiih and Core Mediator within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1803 b:0.0 occ:1.00 OD1 A:ASP485 2.3 0.0 1.0 OD2 A:ASP485 2.4 0.0 1.0 CG A:ASP485 2.7 0.0 1.0 OD1 A:ASP481 2.8 0.0 1.0 OD2 A:ASP483 3.3 0.0 1.0 CG A:ASP481 3.6 0.0 1.0 OD2 A:ASP481 3.6 0.0 1.0 OD1 A:ASP483 3.7 0.0 1.0 CG A:ASP483 3.8 0.0 1.0 NH2 A:ARG446 4.1 0.0 1.0 CB A:ASP485 4.1 0.0 1.0 O A:ASP481 4.4 0.0 1.0 O A:ASP483 4.5 0.0 1.0 CA A:ASP485 4.8 0.0 1.0 N A:ASP481 4.9 0.0 1.0 CB A:ASP481 5.0 0.0 1.0 N A:ASP485 5.0 0.0 1.0

S.Schilbach, M.Hantsche, D.Tegunov, C.Dienemann, C.Wigge, H.Urlaub, P.Cramer. Structures of Transcription Pre-Initiation Complex with Tfiih and Mediator. Nature V. 551 204 2017.
ISSN: ESSN 1476-4687
PubMed: 29088706
DOI: 10.1038/NATURE24282