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Magnesium in PDB 5uv4: Crystal Structure of Maize SIRK1 (Sucrose-Induced Receptor Kinase 1) Kinase Domain Bound to Amp-Pnp

Protein crystallography data

The structure of Crystal Structure of Maize SIRK1 (Sucrose-Induced Receptor Kinase 1) Kinase Domain Bound to Amp-Pnp, PDB code: 5uv4 was solved by R.M.Counago, B.Aquino, K.B.Massirer, O.Gileadi, P.Arruda, Structuralgenomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.87 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.444, 74.532, 79.742, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 21.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Maize SIRK1 (Sucrose-Induced Receptor Kinase 1) Kinase Domain Bound to Amp-Pnp (pdb code 5uv4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Maize SIRK1 (Sucrose-Induced Receptor Kinase 1) Kinase Domain Bound to Amp-Pnp, PDB code: 5uv4:

Magnesium binding site 1 out of 1 in 5uv4

Go back to Magnesium Binding Sites List in 5uv4
Magnesium binding site 1 out of 1 in the Crystal Structure of Maize SIRK1 (Sucrose-Induced Receptor Kinase 1) Kinase Domain Bound to Amp-Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Maize SIRK1 (Sucrose-Induced Receptor Kinase 1) Kinase Domain Bound to Amp-Pnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1102

b:52.5
occ:1.00
O1A A:ANP1101 1.8 52.6 1.0
OD2 A:ASP907 2.0 54.1 1.0
OD1 A:ASN893 2.1 45.4 1.0
O A:HOH1212 2.2 51.7 1.0
O1G A:ANP1101 2.2 54.2 1.0
O1B A:ANP1101 2.3 53.2 1.0
CG A:ASP907 3.0 59.2 1.0
PA A:ANP1101 3.0 55.7 1.0
CG A:ASN893 3.3 47.7 1.0
PB A:ANP1101 3.3 54.7 1.0
O3A A:ANP1101 3.4 52.9 1.0
PG A:ANP1101 3.5 50.9 1.0
O5' A:ANP1101 3.7 60.5 1.0
OG1 A:THR906 3.7 48.5 1.0
N3B A:ANP1101 3.7 52.1 1.0
OD1 A:ASP907 3.8 62.3 1.0
CB A:ASP907 3.9 50.7 1.0
O A:HOH1227 3.9 62.7 1.0
ND2 A:ASN893 4.0 46.1 1.0
O A:SER892 4.0 48.5 1.0
NZ A:LYS789 4.1 52.0 1.0
O2A A:ANP1101 4.3 57.3 1.0
O2G A:ANP1101 4.4 53.0 1.0
CB A:ASN893 4.4 40.4 1.0
O3G A:ANP1101 4.4 50.5 1.0
CA A:ASN893 4.5 43.3 1.0
C A:SER892 4.5 48.8 1.0
OG A:SER892 4.6 58.2 1.0
O2B A:ANP1101 4.7 58.3 1.0
N A:ASN893 4.8 44.6 1.0
C8 A:ANP1101 4.8 64.4 1.0
C2' A:ANP1101 4.8 64.7 1.0
CB A:THR906 4.9 49.5 1.0

Reference:

B.Aquino, R.M.Counago, K.B.Massirer, O.Gileadi, P.Arruda, Structural Genomics Consortium (Sgc). Crystal Structure of Maize SIRK1 (Sucrose-Induced Receptor Kinase 1) Kinase Domain Bound to Amp-Pnp To Be Published.
Page generated: Tue Aug 12 20:54:38 2025

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