Magnesium in PDB 5vw3: Nadp+ Soak of Y316S Mutant of Corn Root Ferredoxin:Nadp+ Reductase

All present enzymatic activity of Nadp+ Soak of Y316S Mutant of Corn Root Ferredoxin:Nadp+ Reductase:
1.18.1.2;

The structure of Nadp+ Soak of Y316S Mutant of Corn Root Ferredoxin:Nadp+ Reductase, PDB code: 5vw3 was solved by K.M.Kean, R.A.Carpenter, A.R.Hall, P.A.Karplus, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.93 / 1.45
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	58.813, 58.813, 187.542, 90.00, 90.00, 120.00
R / Rfree (%)	10.8 / 14.4

The binding sites of Magnesium atom in the Nadp+ Soak of Y316S Mutant of Corn Root Ferredoxin:Nadp+ Reductase (pdb code 5vw3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Nadp+ Soak of Y316S Mutant of Corn Root Ferredoxin:Nadp+ Reductase, PDB code: 5vw3:

Magnesium binding site 1 out of 1 in the Nadp+ Soak of Y316S Mutant of Corn Root Ferredoxin:Nadp+ Reductase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Nadp+ Soak of Y316S Mutant of Corn Root Ferredoxin:Nadp+ Reductase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:30.4 occ:1.00 O A:HOH917 2.0 27.4 1.0 O A:HOH587 2.0 30.9 1.0 O A:HOH722 2.0 24.1 1.0 O A:HOH913 2.0 35.5 1.0 O A:HOH600 2.1 22.8 1.0 O A:HOH819 2.1 31.6 1.0 HA A:ASP211 3.8 29.1 1.0 O A:HOH644 4.0 21.1 1.0 O A:HOH669 4.0 58.0 1.0 O A:HOH721 4.0 55.7 1.0 O A:HOH871 4.1 50.7 1.0 HB2 A:LEU213 4.1 23.2 1.0 O A:HOH543 4.1 35.2 1.0 O A:SER210 4.1 22.4 1.0 HA A:VAL45 4.1 19.9 1.0 O A:ASP211 4.3 20.9 1.0 O A:LEU44 4.3 16.3 1.0 O A:HOH621 4.3 36.7 1.0 O A:LEU213 4.3 16.0 1.0 H A:GLY46 4.4 24.5 1.0 CA A:ASP211 4.6 24.2 1.0 C A:ASP211 4.7 21.6 1.0 O A:HOH652 4.7 56.9 1.0 H A:LEU213 4.7 19.1 1.0 N A:GLY46 4.7 20.4 1.0 HA3 A:GLY46 4.9 26.2 1.0 O A:HOH655 4.9 15.1 1.0 OE2 A:GLU217 5.0 35.5 1.0 CB A:LEU213 5.0 19.3 1.0

K.M.Kean, R.A.Carpenter, V.Pandini, G.Zanetti, A.R.Hall, R.Faber, A.Aliverti, P.A.Karplus. High-Resolution Studies of Hydride Transfer in the Ferredoxin:Nadp(+) Reductase Superfamily. Febs J. V. 284 3302 2017.
ISSN: ISSN 1742-4658
PubMed: 28783258
DOI: 10.1111/FEBS.14190